Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00621 ATGGCGACCGACTATGCAAGTGTTGGGAGCTTGGATCTCTTGCCTTCTGCACTGATCGCGACAATCATGACCAAGCTCGATGTGGCTTCCATTTGCTCTATCGCTTCAACTTGCCGGACTTTCCACGCTTGCGCTTCTCAGACCCTTTCCTGCCTTCCCACTTTCCATCTTCTTCAAATTGCTCCAACAAAGGAATTGCTAGGTCCGCTGCTGCCTCCTAACCCTTATCTTAGGAGCCTAAAAATTGACTGTGGCAAGCTGGATGATTCAGCGATCAAAATTCTGCTACAGCCTTCTTTGCACGAACTCAGCCTGCATAATTGTGTGGATTTTAGTGGTAAATTACTTTCTGAAATTGGAGGGCGATGCAAGGATTTGAGGTCACTTTACTTGGGTTCGGTGGCTGTCAAAAGAGGCCGAGCTATTCATCTTTCTGATATGGAGGAGTTACTAAGGGGGTGCTCTCGATTAGAATCACTGATCCTAATGTTAGATGCCTCGATATTCCTTCATCGTGACTTTCCTCAAGTTTGGGCTTTGGCATCAGAGAAACTCACTTCTCTTGAGATTGGCTATATTTCTTCAGTAATGGTGACTGGGTTGTTTCGCCACGATCAATTATCCTATCATGTTTTACCATCCATATTGCCAAACATTCAAAAGCTGTGCCTTTCAGTTGATTCTATTACTGATGCCATGGTTGGTACTATATCTATGGCTCTCATCAATTTGACCCATCTTGATCTTCAAGATGCACCTTTTATCGAACCAAGAGCTTTATTTGACCTTACTAATTATGGCCTGCAACAAATCAATTGTTATGGAAAACTAAAGTATCTATCATTGATTCGGAGCCAGGAGTTTATGATTACATTTTTTAGGAGAGTAAGTGATCTTGGGCTTCTTTTTTTGGCTGATAAATGTGCAAAGATGGAAAGCATATGTCTTGGTGGTTTTTGTCGTGTGACAGACACTGGGTTCAAGACAATTTTACACTCTTGCTCTAGTCTGCGCAAACTTAAGGTGTCTCATGGATCTCAGTTGACAGATTTAGTTTTTCATGACATCTCTGCTACATCCCTTACCTTGGTACATGTAAGCTTGAGATGGTGCAATCTCTTAACCAATCATGCTGTGATAAATTTGGCATCGAACAGGGATCTTGAAGTTCTCGACTTAAGAAACTGCAGAAACCTTGGAGATGATTCACTTCAGGCCATTTGCTCCATTTCAAAACTGAAGACACTTCTTTTAGATGGATCTGATATTAGTGATAAAGGATTGTCTTACCTAAGAACTGGGGTGATAAACTCTCTAGTTTCTCTGTCTGTTAGAGGTTGCAAAAGACTCACTGATAAATGTATCTCTCTTCTGTTTGAAGGCTCATCGAAATTGAAATTGCGTGAGTTGGATCTATCGAATCTTCCTTACCTCTCCGATGCTGCAATTTTAACTTTAGCAAAAAGGAGAGTTCCGATTGTCGAACTTCGGCTACGCCAGTGCCCCTACATAGGTGACACTTCTGTGATGGCATTGGCCTCGATGCAGGTCGATGACGACAGATGGCATGGCAGTTGTTTGCAGTTGTTGGATCTGTATAACTGTGGTGGCATTACGCCACTTGCATTCCAGTGGTTTAAGAGCCCGTATTTTCCAAAGCTGAGATGGTTAGGAGTGACAGGAAGTGTAAATAGAGATATAGTGGACACCATAGCTAGAAATAGACCCTTTTTGCACGTGGCCTGCCGTGGGGAGGAGTTGGGAGCCGACCAGTTGGACAACACAGATGTTCCACACTTGCATGACGAAGAGGAGGTGGATGAACACGAGCAGTGGCTTTTGGAAGCTGGCGATGAGATTGCCAATGAAGACATGGAGGATGCTGAAATTGGTGGAGAACCACTGGAGTGA 1911 43.43 MATDYASVGSLDLLPSALIATIMTKLDVASICSIASTCRTFHACASQTLSCLPTFHLLQIAPTKELLGPLLPPNPYLRSLKIDCGKLDDSAIKILLQPSLHELSLHNCVDFSGKLLSEIGGRCKDLRSLYLGSVAVKRGRAIHLSDMEELLRGCSRLESLILMLDASIFLHRDFPQVWALASEKLTSLEIGYISSVMVTGLFRHDQLSYHVLPSILPNIQKLCLSVDSITDAMVGTISMALINLTHLDLQDAPFIEPRALFDLTNYGLQQINCYGKLKYLSLIRSQEFMITFFRRVSDLGLLFLADKCAKMESICLGGFCRVTDTGFKTILHSCSSLRKLKVSHGSQLTDLVFHDISATSLTLVHVSLRWCNLLTNHAVINLASNRDLEVLDLRNCRNLGDDSLQAICSISKLKTLLLDGSDISDKGLSYLRTGVINSLVSLSVRGCKRLTDKCISLLFEGSSKLKLRELDLSNLPYLSDAAILTLAKRRVPIVELRLRQCPYIGDTSVMALASMQVDDDRWHGSCLQLLDLYNCGGITPLAFQWFKSPYFPKLRWLGVTGSVNRDIVDTIARNRPFLHVACRGEELGADQLDNTDVPHLHDEEEVDEHEQWLLEAGDEIANEDMEDAEIGGEPLE 636
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5124999 5128056 - Bma016912.1 Bma03g00621 79294

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00621 636 PANTHER RNI-LIKE SUPERFAMILY PROTEIN-RELATED 14 558 - -
Bma03g00621 636 SUPERFAMILY RNI-like 66 516 - -
Bma03g00621 636 SUPERFAMILY F-box domain 4 47 IPR036047 GO:0005515
Bma03g00621 636 Pfam F-box domain 12 45 IPR001810 GO:0005515
Bma03g00621 636 Gene3D Ribonuclease Inhibitor 16 256 IPR032675 -
Bma03g00621 636 Gene3D Ribonuclease Inhibitor 258 363 IPR032675 -
Bma03g00621 636 Gene3D Ribonuclease Inhibitor 387 600 IPR032675 -
Bma03g00621 636 PANTHER UNCHARACTERIZED 14 558 - -
Bma03g00621 636 Pfam Leucine Rich repeat 384 408 IPR001611 GO:0005515
Bma03g00621 636 SMART LRR_CC_2 436 461 IPR006553 -
Bma03g00621 636 SMART LRR_CC_2 241 266 IPR006553 -
Bma03g00621 636 SMART LRR_CC_2 360 385 IPR006553 -
Bma03g00621 636 SMART LRR_CC_2 308 333 IPR006553 -
Bma03g00621 636 SMART LRR_CC_2 490 515 IPR006553 -
Bma03g00621 636 SMART LRR_CC_2 464 489 IPR006553 -
Bma03g00621 636 SMART LRR_CC_2 97 122 IPR006553 -
Bma03g00621 636 SMART LRR_CC_2 334 359 IPR006553 -
Bma03g00621 636 SMART LRR_CC_2 386 410 IPR006553 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00621 - - - cit:102611025 932.939
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00621 Bma-Chr3:5124999 Bma08g00842 Bma-Chr8:46376692 8.68E-10 dispersed
Bma03g00621 Bma-Chr3:5124999 Bma08g00739 Bma-Chr8:43462595 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g223 . . . . . . . . . Cmo11g01759 . . . . Sed04g3823 Cpe04g00612 . Bhi05g01663 Tan02g0637 Cmetu01g0006 . . . . . . . . . . . . . . . . . . . Blo04g00588 . . Bda14g00633 . . Bma03g00621 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006869 2 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 3 2 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma03g00621 Bma_Chr03 FPKM 31.557692 33.50211 24.93458 25.308512 34.635929 29.78265 33.877224 40.762367 38.209217 37.772526