Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00630 ATGGCTTTGTTTATCTGCTTTATCTTTTTTCTAGTTTCCTCTGTCACTGCTTGTGATCGCTGTGTGCATCATACCAGAGCTGCTTATTTCTCCAAAGCTTCCTCTCTTTCTTCTGGGGCTTGTGGGTATGGCTCATTATCACTGGGCTTCAACCGTGGACATCTTGCAGCTGGTGTGGCTTCCCTTTACAAAGATGGAGCTGGTTGTGGTGCTTGCTTTCAGATAAGATGCAAGAACACGACTCTTTGTACAAGATCGGGGACGAAAGTGATTTTGACTGATCTGAATACAAATAACGAAACAGATTTTGTTCTGAGTAGCAGAGCCTTTACAGCAATGGCTCAAAAGGGTATGACCAAGGACATTCTGAGACATGGTGTCGTTGATGTGGAATATAAGAGAGTACCATGCGAGTATAAAAATCAAAACTTGGCCGTGCGAGTCGAAGAATCGAGCAAAAAACCAAATTATCTAGCAATCAAGTTCCTATACCAAGGTGGTCAGACAGCAATAGTTGGCGTTGATGTTGCTCAGCAGGTGGGTTCTTCAAATTGGAGCTTCTTGAGTAGAAAGCATGGCGCTGTGTGGGATACAAGTAGAGTCCCAAACGGAGCTCTGCAATTTCGCATGGTGGTTACTTCTGGGTACGACGGAAAATGGATCTGGGCAAAGAGTGTTCTTCCAGAAGACTGGAAATCAGGCGTCACATATGATTCTGGAGTTCAAATCAATGACATCGCACAAGAGGGTTGCTTTCCTTGCTACCTGGAAAACTGGAAATGA 783 44.32 MALFICFIFFLVSSVTACDRCVHHTRAAYFSKASSLSSGACGYGSLSLGFNRGHLAAGVASLYKDGAGCGACFQIRCKNTTLCTRSGTKVILTDLNTNNETDFVLSSRAFTAMAQKGMTKDILRHGVVDVEYKRVPCEYKNQNLAVRVEESSKKPNYLAIKFLYQGGQTAIVGVDVAQQVGSSNWSFLSRKHGAVWDTSRVPNGALQFRMVVTSGYDGKWIWAKSVLPEDWKSGVTYDSGVQINDIAQEGCFPCYLENWK 260
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5187959 5189865 + Bma016921.1 Bma03g00630 79303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00630 260 Gene3D - 139 244 IPR036749 -
Bma03g00630 260 PRINTS Expansin/Lol pI family signature 225 239 IPR007118 GO:0005576
Bma03g00630 260 PRINTS Expansin/Lol pI family signature 185 199 IPR007118 GO:0005576
Bma03g00630 260 PRINTS Expansin/Lol pI family signature 125 141 IPR007118 GO:0005576
Bma03g00630 260 PRINTS Expansin/Lol pI family signature 37 55 IPR007118 GO:0005576
Bma03g00630 260 PRINTS Expansin/Lol pI family signature 59 77 IPR007118 GO:0005576
Bma03g00630 260 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 156 239 IPR007117 -
Bma03g00630 260 PANTHER EXPANSIN-LIKE A1-RELATED 5 256 - -
Bma03g00630 260 SMART dpbb_1 56 132 IPR007112 -
Bma03g00630 260 PRINTS Major pollen allergen Lol pI signature 114 129 IPR005795 GO:0005576|GO:0019953
Bma03g00630 260 PRINTS Major pollen allergen Lol pI signature 163 178 IPR005795 GO:0005576|GO:0019953
Bma03g00630 260 PRINTS Major pollen allergen Lol pI signature 147 162 IPR005795 GO:0005576|GO:0019953
Bma03g00630 260 PRINTS Major pollen allergen Lol pI signature 57 68 IPR005795 GO:0005576|GO:0019953
Bma03g00630 260 PRINTS Major pollen allergen Lol pI signature 215 232 IPR005795 GO:0005576|GO:0019953
Bma03g00630 260 SUPERFAMILY PHL pollen allergen 143 239 IPR036749 -
Bma03g00630 260 SUPERFAMILY Barwin-like endoglucanases 6 141 IPR036908 -
Bma03g00630 260 Pfam Expansin C-terminal domain 145 228 IPR007117 -
Bma03g00630 260 Gene3D - 12 138 IPR036908 -
Bma03g00630 260 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 38 142 IPR007112 -
Bma03g00630 260 PANTHER EXPANSIN-B3 5 256 - -
Bma03g00630 260 Pfam Lytic transglycolase 56 132 IPR009009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00630 Bma-Chr3:5187959 Bma02g01371 Bma-Chr2:56088442 2.22E-27 dispersed
Bma07g01609 Bma-Chr7:51522882 Bma03g00630 Bma-Chr3:5187959 4.77E-56 transposed
Bma14g00644 Bma-Chr14:6941482 Bma03g00630 Bma-Chr3:5187959 1.29E-60 transposed
Bma03g00630 Bma-Chr3:5187959 Bma08g00734 Bma-Chr8:43266477 3.43E-160 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00630 - - pop:7472089 431.409