Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00635 GATATGGGTGCCGAGGGCGATTCTAGTGAGTCTAGAACAGGCGGTGACGGTGGAGAAGAGGTCGCGATTAATATTCGCTGCTCGAACGGTACGAAATTTACGGTGAGGACGTGCCTCGAGTCTACGGTTGGGGCCTTCAAAGTACTTATAGCTCAGAATTCTGATTTTCCAGCTGATCAGCAGCGATTGATCTACAAAGGCCGCATATTGAAGGATGACCAGACCCTGTATAGTTATGGTATGCAAGCAGATCATACAATTCACATGGTTCGTGGTTTTGCCCCTACTGCATCAACGCCAACTGCTACAACCACTGATGCTAATACTGGAACTGCTAACAACACTGTGGGTGTCACAAGAGGTGTCGGTCCCACTGATGGGGGAGCTTTAGGGAATGGAACACCTTTATTTCCTGGACTTGGTTTCAACCCACTAGGTGGAGGTGCATCATCTGGTTTATTTGGCGCTGGTCTACCGGAATTCGAGCAAGTGCAGCAACAACTGACTCAGAACCCAAACATGATGAGGGAAATAATGAACATGCCTGCCATTCAGAACCTAATGAATAATCCTGATTTGATGCGAACTTTGATTATGAGCAATCCTCAAATGCGGGAAATTATTGATAGAAATCCAGAACTTGGTCATATTCTTAATGATCCTGGTGTTCTCAGGCAGACTTTAGAAGCTGCGAGGAACCCAGAGCTTATGCGGGAGATGATGAGAAACACCGACAGGGCAATGAGTAATATTGAATCAAGTCCCGAAGGATTCAATATGCTGAGGCGTATGTATGAAAATGTCCAAGAGCCATTTATGAATGCTACAGCAATGGCTGGAAACAACGGAAATGATTTGAGTTCAAACCCATTTGCAGCTCTGTTAGGAAACACTGCTGGGGCCCAAGCTAGGGCTGGGTCTAATAATACTTCAGTCGCTAGTACTGTAACAAACACAGGGACTACTGCTCCTAACATAAATCCACTTCCTAATCCGTGGGGTGGAGGAAATCAAGCAAACCCCACAATGCCCAATCTGGCTGAGGAATCTAGGACTCCCAGTATTGGTAATTTAGGAGGACTTGGTCTTCCTGATATGGAGCAGATGATGAGTGGTGGGCCTGATTCGGCCATGTTGAATCAGTTTTTGCAAAACCCCGCAATATCACAGATGAGGCAGAGCCTGCTCTCTATCTTTTTTTTTTTTTATTTTTTTTTTTTTCTTTTTTTTTTTTTATTTTTTTTTTTTTATTTTTTTTTTTTTGTTTTTTTTTTTTTCTTTTTTTTTTTTTCTTTTTTTTTTTTTATTTTTTTTTTTTTTTATTTTTTTTTTTTTATTTTTTTTTTTTTATTTTTTTTTTTTTCTTTTTTTTTTTTTTCTTTTTTTTTTTTTCTTTTTTTTTTTTTCTTTTTTTTTTTTTATTTTTTTTTTTTTATTTTTTTTTTTTTATTTTTTTTTTTTTATTTTTTTTTTTTTGTTTTTTTTTTTTTATTTTTTTTTTTTTATTTTTTTTTTTTTGTTTTTTTTTTTTTCTTTTTTTTTTTTTGTTTTTTTTTTTTTATTTTTTTTTTTTTCTTTTTTTTTTTTTTTATTTTTTTTTTTTTTGTTTTTTTTTTTTTCTTTTTTTTTTTTTTCTTTTTTTTTTTTGTTTTTTTTTTTTTATTTTTTTTTTTTTCTTTTTTTTTTTTTATTTTTTTTTTTTTTGTTTTTTTTTTTTTTATTTTTTTTTTTTTTTTGTTTTTTTTTTTTTCTTTTTTTTTTTTTTGTTTTTTTTTTTTTTCTTTTTTTTTTTTTATTTTTTTTTTTTTTGTTTTTTTTTTTTTTGTTTTTTTTTTTTTCTTTTTTTTTTTTTATTTTTTTTTTTTTATTTTTTTTTTTTTATTTTTTTTTTTTTGTTTTTTTTTTTTTATTTTTTTTTTTTTCTTTTTTTTTTTTTATTTTTTTTTTTTTCTTTTTTTTTTTTTATTTTTTTTTTTTTATTTTTTTTTTTTTGTTTTTTTTTTTTTATTTTTTTTTTTTTTCTTTTTTTTTTTTTGTTTTTTTTTTTTTCTTTTTTTTTTTTTGTTTTTTTTTTTTTGTTTTTTTTTTTTTGTTTTTTTTTTTTTGTTTTTTTTTTTTTGTTTTTTTTTTTTTTATTTTTTTTTTTTTCTTTTTTTTTTTTTATTTTTTTTTTTTTGTTTTTTTTTTTTTTATTTTTTTTTTTTTCTTTTTTTTTTTTTATTTTTTTTTTTTTCTTTTTTTTTTTTTATTTTTTTTTTTTTATTTTTTTTTTTTTGTTTTTTTTTTTTTTCTTTTTTTTTTTTTATTTTTTTTTTTTTGTTTTTTTTTTTTTGTTTTTTTTTTTTTATTTTTTTTTTTTTTCTTTTTTTTTTTTTCTTTTTTTTTTTTTGTTTTTTTTTTTTTCTTTTTTTTTTTTTCTTTTTTTTTTTTTTCTTTTTTTTTTTTTGTTTTTTTTTTTTTCTTTTTTTTTTTTTATTTTTTTTTTTTTTTATTTTTTTTTTTTTTATTTTTTTTTTTTTTCTTTTTTTTTTTTTATTTTTTTTTTTTTATTTTTTTTTTTTTATTTTTTTTTTTTTATTTTTTTTTTTTTATTTTTTTTTTTTTTATTTTTTTTTTTTTATTTTTTTTTTTTTGTTTTTTTTTTTTTGTTTTTTTTTTTTTTATTTTTTTTTTTTTTCTTTTTTTTTTTTTGTTTTTTTTTTTTTTATTTTTTTTTTTTTTTTATTTTTTTTTTTTTGTTTTTTTTTTTTTTGTTTTTTTTTTTTTCTTTTTTTTTTTTTTTGTTTTTTTTTTTTTTGTTTTTTTTTTTTTTTTATTTTTTTTTTTTTATTTTTTTTTTTTTTTGTTTTTTTTTTTTTTCTTTTTTTTTTTTTTGTTTTTTTTTTTTTCTTTTTTTTTTTTTTCTTTTTTTTTTTTTGTTTTTTTTTTTTTATTTTTTTTTTTTTGTTTTTTTTTTTTTTCTTTTTTTTTTTTTTGTTTTTTTTTTTTTCTTTTTTTTTTTTTTGTTTTTTTTTTTTTCTTTTTTTTTTTTTATTTTTTTTTTTTTTATTTTTTTTTTTTTTTTTGTTTTTTTTTTTTTTCTTTTTTTTTTTTTTATTTTTTTTTTTTTGTTTTTTTTTTTTTTTTATTTTTTTTTTTTTGTTTTTTTTTTTTTTTATGATGGTGTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAA 4236 15.04 DMGAEGDSSESRTGGDGGEEVAINIRCSNGTKFTVRTCLESTVGAFKVLIAQNSDFPADQQRLIYKGRILKDDQTLYSYGMQADHTIHMVRGFAPTASTPTATTTDANTGTANNTVGVTRGVGPTDGGALGNGTPLFPGLGFNPLGGGASSGLFGAGLPEFEQVQQQLTQNPNMMREIMNMPAIQNLMNNPDLMRTLIMSNPQMREIIDRNPELGHILNDPGVLRQTLEAARNPELMREMMRNTDRAMSNIESSPEGFNMLRRMYENVQEPFMNATAMAGNNGNDLSSNPFAALLGNTAGAQARAGSNNTSVASTVTNTGTTAPNINPLPNPWGGGNQANPTMPNLAEESRTPSIGNLGGLGLPDMEQMMSGGPDSAMLNQFLQNPAISQMRQSLLSIFFFFYFFFFLFFFLFFFFYFFFFVFFFFFFFFSFFFFIFFFFYFFFFIFFFLFFFFSFFFFSFFFFLFFFFFFFFYFFFFIFFFLFFFFYFFFFVFFFLFFFFYFFFFVFFFFFFFFCFFFFIFFFFFFFFFIFFFFVFFFFFFFFFFFFFVFFFLFFFFSFFFFIFFFFVFFFFIFFFFLFFFFSFFFFCFFFFSFFFFIFFFFVFFFFVFFFFFFFFYFFFFIFFFLFFFFCFFFFIFFFFFFFFYFFFFLFFFLFFFFYFFFFVFFFLFFFFFFFFFCFFFFLFFFLFFFFCFFFFVFFFLFFFFCFFFFYFFFFLFFFLFFFFCFFFFYFFFFLFFFLFFFFSFFFFIFFFLFFFFCFFFFSFFFFIFFFLFFFFCFFFFIFFFFLFFFFFFFFCFFFFLFFFFFFFFFFFFFCFFFFLFFFLFFFFFIFFFFIFFFFLFFFLFFFFYFFFFIFFFLFFFFYFFFFYFFFFIFFFLFFFFCFFFFYFFFFSFFFFVFFFFIFFFFLFFFFCFFFFCFFFFLFFFFCFFFFCFFFFFIFFFLFFFFFVFFFFLFFFFVFFFFFFFFFFFFFCFFFFIFFFLFFFFFFFFFLFFFFSFFFFCFFFFLFFFLFFFFLFFFFFLFFFFFFFFFLFFFFCFFFFFIFFFLFFFFFMMVYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYI 1411
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5235540 5240709 + Bma016928.1 Bma03g00635 79308

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00635 1411 SUPERFAMILY Ubiquitin-like 15 104 IPR029071 -
Bma03g00635 1411 Pfam Ubiquitin family 23 90 IPR000626 GO:0005515
Bma03g00635 1411 MobiDBLite consensus disorder prediction 1 20 - -
Bma03g00635 1411 PANTHER UBIQUILIN 2 397 - -
Bma03g00635 1411 Gene3D - 18 106 - -
Bma03g00635 1411 MobiDBLite consensus disorder prediction 317 337 - -
Bma03g00635 1411 Gene3D - 196 253 - -
Bma03g00635 1411 CDD Ubl_Dsk2p_like 21 93 - -
Bma03g00635 1411 SMART CBM 201 240 IPR006636 -
Bma03g00635 1411 SMART CBM 147 188 IPR006636 -
Bma03g00635 1411 SMART ubq_7 21 92 IPR000626 GO:0005515
Bma03g00635 1411 ProSiteProfiles Ubiquitin domain profile. 21 90 IPR000626 GO:0005515
Bma03g00635 1411 PANTHER UBIQUITIN DOMAIN-CONTAINING PROTEIN DSK2A-RELATED 2 397 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00635 K04523 UBQLN, DSK2; ubiquilin - mnt:21390006 543.117
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00282 Bma-Chr1:2374754 Bma03g00635 Bma-Chr3:5235540 3.26E-09 dispersed
Bma03g00635 Bma-Chr3:5235540 Bma08g00719 Bma-Chr8:43038838 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g281 . . . . . Bpe12g00148 . . Cmo19g00813 Cmo11g01783 . . . . Sed05g2177 Cpe04g00628 Cpe15g00637 Bhi05g01590 Tan02g0585 Cmetu01g0562 . . . . Cla02g00354 Cam02g0363 Cec02g0364 Cco02g0371 Clacu02g0354 Cmu02g0351 . Cone12ag1271 Cone8ag1325 . . . Csa07g00180 . . Blo04g00603 Blo13g00475 . Bda14g00644 . . Bma03g00635 . . . . . Cma19g00792 Car11g01410 Car19g00609 . . . . . . . . . . . . . . . . Lsi11g01279 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0034590 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma03g00635 Bma_Chr03 FPKM 2.325782 2.987426 9.047178 9.775467 8.881341 9.761416 7.736111 7.94589 8.588387 9.569202