Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00636 ATGAGCCCAGCAACTAAACTCACCAAAGCTCTGCTCCTTAACACCGCCAACCCGAAACTTGCATGGTGCCTCGTCAGGCGCATTCTCTCCTCACCCTCCTCGGCCCCTCTATCCCTCCCCTCCATATCCGCCATTGCTCGGATTCTTATTCCTCGCAGAATGCTCCGCGAAATTGACCATCTCCATCACCTTCTACTCCTCTCGCACCACCTCGACACTGCCCTTCTTTCTCTTTTTTGTCTGGTCCGGATGTTGGCTCTGTCTGGTCTCCCTGATCAAGCTCTTTCCCATTTTAAAACCCTTAGATCCCGGTTTCCGGAAAACCCTCCTCCCATTTTTTTGTATAATTTGCTCCTTCAGAACTTTCTGAAGAAGAATTCTGCAGACTCTGTCACTTGGCTGTATAAGGATATGATTCTTGCTAAGGTTTCTCCTGAAACTTACACTTTCAATCTTTTGATCTGTGCCTTATGTCATTCGGGTCAGATAGAAGCTGCAAGGGAGGTGTTTGATAAAATGTCTGAGAAGGGTTGTGAACCAAATGCTTACACTATTGAGATTTTGGTTCGTGGGTATTGTAAAGCCAGTCTTGATAACCGAGGGTTGGAACTTGTGAATGAGTTGAGGGGTTGTGGTTTTTTGCCCAGTAATGTTGTCTACAATACTTTGATATCTAGTTTTTGCAGGGTAGGTCAGACTGATAAGGCTGAGATGTTGGTCGAGTTAATGAAAGAGGATGGTCTGTTTCCAGATGTTGTTACTTTCAATTCAAGAATAGCAGCTCTTTGTAGAGATGGGCAAATGTTAGAAGCGTCTAGAATTTTTAGGGATATGCAAATCGATGATTATTTGGGGTTGCCGCGGCCTAATGTTGTCACCTATAATATAATGCTTAAGGGGTTTTGCGATATAGGAATGTTAGCGGAAGCAAAGAGTTTGTTTGAATCTATGAGAAGCATCGGAGATTTCTCAAACTTGGAAAGTTATAATATATTGTTGTTGGGTTTGGTTAGGAACGGGAAGCTTTTGGAGGCACGTTTGATTCTTAAAGAGATGGCTGATGAAGGGATAGAACCTAGTGTTTGGTCATATAACATTGTGCTGAATGGACTTTGTAAAAGCGGACTACTTTCTGATGCTGTAAATTTAATAAGCTTAATGAGAATTAATGGCTTATATCCAGATATAGTAACCTATAGCACCTTATTACATGGATACTGCCGTAAGAGAAAGGTACTTGAAGCTAGTCGTGTTCTTCATCAAATGACTCAAAATGGTTATTCTCCAAATAATTATACATGTAACATTTTGCTTCACAGTCTTTGGAAAGAAGGGAGAACATCAGAAGCAGAGAAATTTCTGCAAAAGATGAATGAGAGAGATAATATCTTGGACACCACAACATGCAATATTGTAATTGATGGCCTTTGTAAAATTGGGAAAGTGGACGAAGCTATTGAAATGATGAGCAGGATGTGGACTCATGGACAGGCTGCCCTTGATAGTGCAGGAAACTCTCTTACATGCTTGTTTGACAGTAGTGATGATGGGAAGAAATGTAGGCCTGATTTGATTACATATTCGACCATAATTAAAGCGCTGTGCAAGTCTGGGAGACTTGATGAGGCGAAAAAAAAGTTCACTGAGATGTCTGGGAAAGGTTTGCATCCTGATACGATGATCTTCAATATTTTCATTCTGAGTTACTGTAAAGAGGGTAAAATATCTTCTGCCTTTCGAGTTTTGAAGGACATGGAAAAAAAAGGCTGCAACAAGAGCATTCATACCTATAATTCGCTGATACTGGGCTTAGGTAGAAAAAACCAAATATTTGAAATGTATGGTCTTCTAAATGAGATGAGAGAAAGAGGTATTTCTCCTAATGTTTGGACATATAATAATATGATCAGCAGTTTATCTGAAGGAGGGAGACTTGGAGATGCCGCTTCACTTTTGGATGAAATGCTGGAAAAGGAAATATTTCCTAATATTTCTTCCTTCAGTATTCTAATCAAAGCCTTTTGCAAATCATGTGATTTTGGAGCAGCCATGGAGATATTCGAGATAGCCTTGACTGTATGTGGCTACCAGCAACCCTTGTATAGCTTGATGTTTAACGAGTTACTTTCTGGAGGAGAAGTTTCCAACGCAAAAGAATTGTATGAGGTTGCATTAGATAAATCTTTTGACCTGGATAACTTCCTGTATAAGGATCTCATTGAAAAACTTTGCTTTGATGAAAAGTTGGAGGATGCTTGTTTAGTTCTTCATAAGATGATTGACAAAGGGTATGGATTTGATCCTGCACCGTTGATGTTAGTAATCGATGAACTAGGAAAGAGGGGGAACAGACGTGGGGCTAATGAACTTGCAGAAAAGATGATGAGAATGGCTTCAGAGAGTAGGGTTGTAAATAAGATTCATCGAAGCCGGAGGAAGATCAGTGGTAAAAAGTCAAGTAATAATGAAGAAAGTGATTGGCACAATATAATACACAGTGATGATGGAAGTGGAATTGCTCAGAAAACTCTTAATCGGGTGCAGAAAGGCTGGGGTCAGGGTAACATATTAAGGCCGCAGCACCAGAAAAATGGCATGCTTGATTCCTGGGATGCTGATTTCTAG 2625 40.42 MSPATKLTKALLLNTANPKLAWCLVRRILSSPSSAPLSLPSISAIARILIPRRMLREIDHLHHLLLLSHHLDTALLSLFCLVRMLALSGLPDQALSHFKTLRSRFPENPPPIFLYNLLLQNFLKKNSADSVTWLYKDMILAKVSPETYTFNLLICALCHSGQIEAAREVFDKMSEKGCEPNAYTIEILVRGYCKASLDNRGLELVNELRGCGFLPSNVVYNTLISSFCRVGQTDKAEMLVELMKEDGLFPDVVTFNSRIAALCRDGQMLEASRIFRDMQIDDYLGLPRPNVVTYNIMLKGFCDIGMLAEAKSLFESMRSIGDFSNLESYNILLLGLVRNGKLLEARLILKEMADEGIEPSVWSYNIVLNGLCKSGLLSDAVNLISLMRINGLYPDIVTYSTLLHGYCRKRKVLEASRVLHQMTQNGYSPNNYTCNILLHSLWKEGRTSEAEKFLQKMNERDNILDTTTCNIVIDGLCKIGKVDEAIEMMSRMWTHGQAALDSAGNSLTCLFDSSDDGKKCRPDLITYSTIIKALCKSGRLDEAKKKFTEMSGKGLHPDTMIFNIFILSYCKEGKISSAFRVLKDMEKKGCNKSIHTYNSLILGLGRKNQIFEMYGLLNEMRERGISPNVWTYNNMISSLSEGGRLGDAASLLDEMLEKEIFPNISSFSILIKAFCKSCDFGAAMEIFEIALTVCGYQQPLYSLMFNELLSGGEVSNAKELYEVALDKSFDLDNFLYKDLIEKLCFDEKLEDACLVLHKMIDKGYGFDPAPLMLVIDELGKRGNRRGANELAEKMMRMASESRVVNKIHRSRRKISGKKSSNNEESDWHNIIHSDDGSGIAQKTLNRVQKGWGQGNILRPQHQKNGMLDSWDADF 874
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5256021 5259120 - Bma016929.1 Bma03g00636 79309

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00636 874 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 146 180 IPR002885 -
Bma03g00636 874 TIGRFAM PPR: pentatricopeptide repeat domain 468 496 IPR002885 -
Bma03g00636 874 TIGRFAM PPR: pentatricopeptide repeat domain 595 629 IPR002885 -
Bma03g00636 874 TIGRFAM PPR: pentatricopeptide repeat domain 363 396 IPR002885 -
Bma03g00636 874 TIGRFAM PPR: pentatricopeptide repeat domain 432 461 IPR002885 -
Bma03g00636 874 TIGRFAM PPR: pentatricopeptide repeat domain 253 279 IPR002885 -
Bma03g00636 874 TIGRFAM PPR: pentatricopeptide repeat domain 525 559 IPR002885 -
Bma03g00636 874 TIGRFAM PPR: pentatricopeptide repeat domain 218 252 IPR002885 -
Bma03g00636 874 TIGRFAM PPR: pentatricopeptide repeat domain 292 319 IPR002885 -
Bma03g00636 874 TIGRFAM PPR: pentatricopeptide repeat domain 148 182 IPR002885 -
Bma03g00636 874 TIGRFAM PPR: pentatricopeptide repeat domain 561 591 IPR002885 -
Bma03g00636 874 TIGRFAM PPR: pentatricopeptide repeat domain 631 663 IPR002885 -
Bma03g00636 874 TIGRFAM PPR: pentatricopeptide repeat domain 397 430 IPR002885 -
Bma03g00636 874 TIGRFAM PPR: pentatricopeptide repeat domain 328 361 IPR002885 -
Bma03g00636 874 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 593 627 IPR002885 -
Bma03g00636 874 Gene3D Tetratricopeptide repeat domain 508 612 IPR011990 GO:0005515
Bma03g00636 874 Gene3D Tetratricopeptide repeat domain 445 507 IPR011990 GO:0005515
Bma03g00636 874 Gene3D Tetratricopeptide repeat domain 355 444 IPR011990 GO:0005515
Bma03g00636 874 Gene3D Tetratricopeptide repeat domain 56 197 IPR011990 GO:0005515
Bma03g00636 874 Pfam PPR repeat family 145 194 IPR002885 -
Bma03g00636 874 Pfam PPR repeat family 327 373 IPR002885 -
Bma03g00636 874 Pfam PPR repeat family 394 441 IPR002885 -
Bma03g00636 874 Pfam PPR repeat family 627 676 IPR002885 -
Bma03g00636 874 Pfam PPR repeat family 557 601 IPR002885 -
Bma03g00636 874 Pfam PPR repeat family 215 256 IPR002885 -
Bma03g00636 874 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 430 464 IPR002885 -
Bma03g00636 874 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 251 285 IPR002885 -
Bma03g00636 874 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 216 250 IPR002885 -
Bma03g00636 874 Gene3D Tetratricopeptide repeat domain 285 354 IPR011990 GO:0005515
Bma03g00636 874 PANTHER RESPIRATORY COMPLEX I CHAPERONE (CIA84), PUTATIVE (AFU_ORTHOLOGUE AFUA_2G06020)-RELATED 4 838 - -
Bma03g00636 874 MobiDBLite consensus disorder prediction 816 831 - -
Bma03g00636 874 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 465 499 IPR002885 -
Bma03g00636 874 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 558 592 IPR002885 -
Bma03g00636 874 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 325 359 IPR002885 -
Bma03g00636 874 Gene3D Tetratricopeptide repeat domain 613 697 IPR011990 GO:0005515
Bma03g00636 874 Gene3D Tetratricopeptide repeat domain 198 283 IPR011990 GO:0005515
Bma03g00636 874 Gene3D Tetratricopeptide repeat domain 698 851 IPR011990 GO:0005515
Bma03g00636 874 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 290 324 IPR002885 -
Bma03g00636 874 Pfam PPR repeat 289 318 IPR002885 -
Bma03g00636 874 Pfam PPR repeat 519 551 IPR002885 -
Bma03g00636 874 Pfam PPR repeat 465 492 IPR002885 -
Bma03g00636 874 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 360 394 IPR002885 -
Bma03g00636 874 PANTHER OS02G0132100 PROTEIN 4 838 - -
Bma03g00636 874 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 181 215 IPR002885 -
Bma03g00636 874 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 628 662 IPR002885 -
Bma03g00636 874 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 523 557 IPR002885 -
Bma03g00636 874 MobiDBLite consensus disorder prediction 810 834 - -
Bma03g00636 874 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 395 429 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00636 - - - qsu:112012863 1119.76
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00636 Bma-Chr3:5256021 Bma14g00194 Bma-Chr14:2469323 2.19E-33 dispersed
Bma14g00056 Bma-Chr14:738390 Bma03g00636 Bma-Chr3:5256021 1.40E-46 transposed
Bma12g00890 Bma-Chr12:40178788 Bma03g00636 Bma-Chr3:5256021 2.83E-08 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g286 . . . . . . . . . . . . . . Sed05g2175 . . Bhi05g01588 Tan02g0581 Cmetu01g0188 Lac12g0483 Hepe02g0372 . . Cla02g00351 Cam02g0359 Cec02g0360 Cco02g0366 Clacu02g0351 Cmu02g0348 Cre02g0679 Cone12ag1274 . . . . Csa07g00182 . Cme01g01150 Blo04g00604 . . Bda14g00645 Bpe15g00786 . Bma03g00636 . . . . . . . Car19g00612 . . . . . . . . . . . . . . . . Lsi11g01282 . Chy01g00597 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012269 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma03g00636 Bma_Chr03 FPKM 0.555972 0.416681 0.757079 0.9472 1.23914 1.622086 0.861948 5.128244 4.885126 4.887282