Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00637 ATGGGTAAGGTAGTGGAGAGGAAGAAGAAGAAGAAAGGACGGCCCTCTCTATTAGATCTTCAAAAACGCACAATCAAAGAACAGCAGCAGCTCCAGCAGATAAACTCCAACCATAACTTTGACACTCGCTCTAGCCCTAATTCCACAATTGCCACTACCGTTCGGCGATCTACTCGCCGAAATACCTTCTCCGACAAGCTCTCTCCGGAGGAGGAGGAGGAGGGGGAGGGTTTTGAAGACCCGGAAGACGACGAAGAATTGACCGGGAAGCACCGTGAGAAGAAGCTCAAGCTTGTCCTCCGATTGACATCTCAGAAATCTTCTTTGAATTCGTCGTCTTTAAATTCGGGGGGCCTGGATTCGAATGCGGAGGTGGATGACGACGAGTATGCTAGTAAGAAGCGAAAGATCAATTCAATCGGAGATGGATCTGGGCTCGGAAACCTCGAAAAGGGTGAAAAGTCTAATTCTGCTGCAAAACCGACAACAACCCTACAAGGGGCGGAGTTGGATTTTGGACCCTCGACTCCTTTGCCGGATGAGAAGCTTTTACTATTCATCCTGGACAGACTTCAAAAGAAGGACACATATGGTGTGTTTTCTGAACCAGTGGACCCGGAGGAGCTTCCCGATTACCATGAAGTTATTAAGAACCCGATGGATTTTGCGACAGTGAGGAAAAAGCTAGCCAGCAGAGCTTACGCCAAATTGGAAGAGTTCGAGAAAGATGTTATCTTAATCTGCTCGAATGCAATGCAGTATAATGCTCCAGATACCATCTATTTTAGGCAGGCACGATCCATACTGGAATTGGCAAAAAAGAGCTTCAGGAATTTAAGACAAGATAGTGATGATAATGAACCAGAACCTAAAGTAGTCAGGAGAGGAAGACCACCGACTAAGAATTTGAAACAGCCAATCGGTCAGTCATTCTCCGATCGCGCTAGTTCAGAGTTGTCGGAAGCTACCCTTGCTACCGGTGGAGAAAACAGATATTATGATCTGAGAAAAGGACCTCACCTCTCGGAGAAGGCTGGTTCGGCAGAGTTTTTGGGGAAATTCCCCGGTTCTCGCATTACCGACGCCAATTCAAATTGGTTGACTGAAAACAGATTCGAGATAAATAATGATTTTGCTGGTTCTTTGATGAAAAGTTACTCGACAAAGCAAGGAAAAAAACAGATTGTACCAGATGAGAACAGGCGGAACACATATAAGCAATTCCAATTATCAGATGGTGGACTGGAGTCATCAGTTATGAGTACATTTACGCGAGAGAGAAAGCAACTAATGGCTGTGGGGCTTCACTCGGACCATGGTTATGCCAGGAGCCTTGCTCGATTTGCTGCCACTCTCGGGTCTATTGCTTGGAAAGTTGCTGCGAAGAAAATTGAAAAATCCCTGCCTGCCGGAGGCAAGTTTGGCCATGGTTGGGTTGGAGAAAACGATGTCATACCAACCAGACCATTGCTATCAACATCATCTGAAGGCCAATTATCAATATTGCAGCCCTTTCTTGGTCGGAATAACTCATCTTCAGCTGCAGCTTCTTCCACTCCTGAGATTAAGGATGTTAGTTTACCAAAAATTCCCGACGAAAACACTTCCTCGGAGAAGGATGGACCTTCCATGGATTCCGGCTTAGAAAAAAATATAAGCAAGCCTCCTACCGAATCCGTCCTTACCGAATCTCCTGAACCTCTCACTGGAAAAGGGTATAATATGCATAACAGCAGTATGAATCCAAATCAGTCCAAACCTTCATTTCAGGTTCATAAAAGTCATTTGCAACCTGGGCTGAATGGATGTAGTAACAGCGCCTATGGCTTCAACCCTTCAGATCAACTAGCAAAACTAATCAGATCAGCCGGTTTGAACTTGCAGCCATCTCAAATGCTTCAGACAATATCTAGAACTACTAACACTGACTGCACCACGACACCGAGCAGTGTAATTCGACCTGACCCCGAGTTTTCTCAAAGTGCAGGCAAGATGAATTCAGGTACTTTGTTTAAACGGGATGAGGCGTTGACACCTCAAACCAAAGTTGATCCAGTTCCTCCTGATCTTAATGTCGGATTTCAGTCACCAGGGTCACCTAGCTCGAGCCGAGTTGACTCAGCAGCACGGCCTGACTTAGCGTTGCAGCTCTGA 2154 45.87 MGKVVERKKKKKGRPSLLDLQKRTIKEQQQLQQINSNHNFDTRSSPNSTIATTVRRSTRRNTFSDKLSPEEEEEGEGFEDPEDDEELTGKHREKKLKLVLRLTSQKSSLNSSSLNSGGLDSNAEVDDDEYASKKRKINSIGDGSGLGNLEKGEKSNSAAKPTTTLQGAELDFGPSTPLPDEKLLLFILDRLQKKDTYGVFSEPVDPEELPDYHEVIKNPMDFATVRKKLASRAYAKLEEFEKDVILICSNAMQYNAPDTIYFRQARSILELAKKSFRNLRQDSDDNEPEPKVVRRGRPPTKNLKQPIGQSFSDRASSELSEATLATGGENRYYDLRKGPHLSEKAGSAEFLGKFPGSRITDANSNWLTENRFEINNDFAGSLMKSYSTKQGKKQIVPDENRRNTYKQFQLSDGGLESSVMSTFTRERKQLMAVGLHSDHGYARSLARFAATLGSIAWKVAAKKIEKSLPAGGKFGHGWVGENDVIPTRPLLSTSSEGQLSILQPFLGRNNSSSAAASSTPEIKDVSLPKIPDENTSSEKDGPSMDSGLEKNISKPPTESVLTESPEPLTGKGYNMHNSSMNPNQSKPSFQVHKSHLQPGLNGCSNSAYGFNPSDQLAKLIRSAGLNLQPSQMLQTISRTTNTDCTTTPSSVIRPDPEFSQSAGKMNSGTLFKRDEALTPQTKVDPVPPDLNVGFQSPGSPSSSRVDSAARPDLALQL 717
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5268865 5273535 - Bma016930.2 Bma03g00637 79310

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00637 717 SUPERFAMILY Bromodomain 177 285 IPR036427 GO:0005515
Bma03g00637 717 PRINTS Bromodomain signature 195 208 IPR001487 GO:0005515
Bma03g00637 717 PRINTS Bromodomain signature 243 262 IPR001487 GO:0005515
Bma03g00637 717 PRINTS Bromodomain signature 225 243 IPR001487 GO:0005515
Bma03g00637 717 PRINTS Bromodomain signature 209 225 IPR001487 GO:0005515
Bma03g00637 717 MobiDBLite consensus disorder prediction 279 296 - -
Bma03g00637 717 MobiDBLite consensus disorder prediction 303 320 - -
Bma03g00637 717 MobiDBLite consensus disorder prediction 107 159 - -
Bma03g00637 717 Gene3D - 179 295 IPR036427 GO:0005515
Bma03g00637 717 MobiDBLite consensus disorder prediction 69 83 - -
Bma03g00637 717 MobiDBLite consensus disorder prediction 27 58 - -
Bma03g00637 717 MobiDBLite consensus disorder prediction 571 594 - -
Bma03g00637 717 MobiDBLite consensus disorder prediction 279 320 - -
Bma03g00637 717 ProSiteProfiles Bromodomain profile. 192 262 IPR001487 GO:0005515
Bma03g00637 717 MobiDBLite consensus disorder prediction 27 93 - -
Bma03g00637 717 PANTHER BROMODOMAIN AND WD REPEAT-CONTAINING PROTEIN 1-LIKE 1 717 - -
Bma03g00637 717 SMART bromo_6 173 281 IPR001487 GO:0005515
Bma03g00637 717 MobiDBLite consensus disorder prediction 550 564 - -
Bma03g00637 717 MobiDBLite consensus disorder prediction 640 717 - -
Bma03g00637 717 PANTHER BROMODOMAIN CONTAINING PROTEIN 1 717 - -
Bma03g00637 717 MobiDBLite consensus disorder prediction 640 667 - -
Bma03g00637 717 MobiDBLite consensus disorder prediction 510 594 - -
Bma03g00637 717 ProSitePatterns Bromodomain signature. 198 254 IPR018359 -
Bma03g00637 717 CDD Bromodomain 180 274 - -
Bma03g00637 717 Pfam Bromodomain 187 266 IPR001487 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00637 K22184 BRD9; bromodomain-containing protein 9 - qsu:111985563 676.011
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma03g00637 Bma08g00717 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00637 Bma-Chr3:5268865 Bma10g00553 Bma-Chr10:6691174 2.05E-87 dispersed
Bma10g01004 Bma-Chr10:24011462 Bma03g00637 Bma-Chr3:5268865 1.22E-08 transposed
Bma15g00613 Bma-Chr15:7817101 Bma03g00637 Bma-Chr3:5268865 3.81E-12 transposed
Bma03g00637 Bma-Chr3:5268865 Bma04g00289 Bma-Chr4:2327480 9.81E-118 wgd
Bma03g00637 Bma-Chr3:5268865 Bma08g00717 Bma-Chr8:43014428 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g294 . . . . . Bpe12g00149 . . Cmo19g00818 Cmo11g01786 . . . . . Cpe04g00631 Cpe15g00642 Bhi05g01248 Tan02g0781 . . . . . Cla02g00347 Cam02g0356 Cec02g0357 Cco02g0363 Clacu02g0348 Cmu02g0345 Cre02g0677 . . . . . Csa07g00186 . Cme01g01147 Blo04g00606 Blo13g00473 . Bda14g00648 Bpe15g00784 . Bma03g00637 Bma08g00717 . . . Cma11g01333 Cma19g00798 Car11g01413 Car19g00614 . . . . . . . . . . . . . . . . Lsi11g01285 . Chy01g00594 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005813 1 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 0 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma03g00637 Bma_Chr03 FPKM 2.174972 2.657881 7.394979 7.066262 0.733824 0.481276 0.390457 0.417342 0.0 0.471888