Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00651 ATGGCGTCTCTATCCACCCAACCGTCGAAAAAAGCGATACAAAGCCCAGGCGGTTCGAGTACCTCTCACGGAAACCGTGGTTCGAGTGGACAAACTGTGAAGTTTGCAAGACGAACCTCTAGCGGTCGATATGTCAATCTTTCGAGAGAGGACCTTGACATGTCCGGAGAGTTGTCAGGGGACTACATAAACTACACGGTCCACATCCCGCCAACACTTGACAATCAGCCAATGGACACATCTGTTGCAGCAAAGGCCGACGAGCAGTACCTTTCGAATTCTCTGTTTACGGGTGGATTCAATAGCGTGACTCGTTCTCATCTGATGGACAAGGTTATTGACTCAGAGGTGACTCACCCTCAAATGGCGGGAGCTAAAGGCTCCTCCTGTTCTATGCCTGCTTGTGATGGCAGCAAAGTCATGAAGGATGAAAGGGGTGCAGATGTAATCCCTTGCGAGTGCAGGTTCAAGATTTGCAGGGACTGCTTTCTAGATGCTCAAAAGGAATCAGGAACATGTCCAGGGTGCAAGGAGTCATACAGGATGGGCGATTACGATGACAATTCTCATGATTTTTCCAGTGGAGCTCTGCCATTGACAGCTCCAGGTGGCTCAAAGAGGGATCCCAAAAACATGTCGATGATGAAGAGGAACCGCACGGGAGATTTTGATCACAATCTCGATCAGGAGATTGTCTTCTCGTCCAGAGCGCACGCCAAAGGTGATCACGCGGGGATTCTTCAGCCTCCTAGCAATGATCCATTGATGGGCAGTGTGAAAGAAGACAACCTCATAGACTTCAGTGATGTCGATATTCGCTTGCCCATGTTTGTTTGCTACATCCAATTCCCGCAGAGATTCGAAGGCATTGACCCTGGTCTGGTTTACATTGGAACCGGTTGCATGTTTAGGCAATTTGCACTTTATGGATTTGCACCCCCACAACCTGATAAGATCAAGCACAAGATTGACTTGGAAAATGAGTTTGATCCCGATCTAGATGTGAATTTATTACCAAAATGCTTTGGAAACTCGACAATTTTGGCCGAGTCAATTCTCATTTGCGAGTATCAAGGTCGTCCTCTTGCTGACCATTCTGCTATCAAGTATGGAAGGCCGCCAGGTGCTCTCAGGGTTCCTCGCGAGCCTCTCAATACCACAACAGTTGCCAAAGCCGTCACTGCAATTTCTTGCTCGTACGAAGACAAAACAGAAAGGGGAGAAAGGGGCGGTTTGATTGGTCGGATTTATGGGTCGGTCACCGAAGATGTGGTGACAAGCTACCGCATGCATAACCGTGGATGGCGCTCGATCTACTGCATCACAAAGAGCGATGCTTTTCAACGGTCGGCTCCGATTAACCTCACAGACGTCTACTGCTTCCTCCCTGCACTCTCACTTTTCTCCGGGAACTTCATTGCGCAGACTTTAAATGTCACATTCTTAATGTACTTGCTAATCATTACCATACGTCTCATCTATCTAGCAATACTGGAGGTAAAATGGTCCCGTATAGGATTGGAAGAATGGTGGAGAAATGAACAGTTTTGGCTCATTTCCGGCACGAGTGCTCACTTAGCTGCTGTCGTGCAAGGCCTTCCAAAAGTGATAGCCGGAATAGAAATTTCCTTCACATTGACATCCAAGTCGGCCGGAGAAGACGAGGAGGACATATTTGCTGACCCTCTACCTTCACAATGGAGTTCATTGATGATTCCACCCATTGTTATAGCAATGGTGAACATAATAGCCATTGCAGTGGCATTTTCAAGGACCATTTACAGCACAGTTCCTCAGTGGGGTGAGTTCATTGGGGGTGCATTTTTCAGCTTCTGGGTGTTGGCTCATTTATACCCGTTTGCCAAGGGATTAATGGGCAGGAGAGGCAAAACACCTACAATTGTGATAGTATGGTCTGGTCTCATAGCAATTACACTTTCTTTGCTCTGGATTGCCATCAACTCGCCACAAACAAGCTCTACCGCGGGTACTTCTTCGGGTTTTCAATTCCCTTGA 2016 47.52 MASLSTQPSKKAIQSPGGSSTSHGNRGSSGQTVKFARRTSSGRYVNLSREDLDMSGELSGDYINYTVHIPPTLDNQPMDTSVAAKADEQYLSNSLFTGGFNSVTRSHLMDKVIDSEVTHPQMAGAKGSSCSMPACDGSKVMKDERGADVIPCECRFKICRDCFLDAQKESGTCPGCKESYRMGDYDDNSHDFSSGALPLTAPGGSKRDPKNMSMMKRNRTGDFDHNLDQEIVFSSRAHAKGDHAGILQPPSNDPLMGSVKEDNLIDFSDVDIRLPMFVCYIQFPQRFEGIDPGLVYIGTGCMFRQFALYGFAPPQPDKIKHKIDLENEFDPDLDVNLLPKCFGNSTILAESILICEYQGRPLADHSAIKYGRPPGALRVPREPLNTTTVAKAVTAISCSYEDKTERGERGGLIGRIYGSVTEDVVTSYRMHNRGWRSIYCITKSDAFQRSAPINLTDVYCFLPALSLFSGNFIAQTLNVTFLMYLLIITIRLIYLAILEVKWSRIGLEEWWRNEQFWLISGTSAHLAAVVQGLPKVIAGIEISFTLTSKSAGEDEEDIFADPLPSQWSSLMIPPIVIAMVNIIAIAVAFSRTIYSTVPQWGEFIGGAFFSFWVLAHLYPFAKGLMGRRGKTPTIVIVWSGLIAITLSLLWIAINSPQTSSTAGTSSGFQFP 671
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5342493 5345624 + Bma016944.1 Bma03g00651 79324

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00651 671 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 113 195 IPR013083 -
Bma03g00651 671 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 458 668 - -
Bma03g00651 671 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 76 226 - -
Bma03g00651 671 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 235 278 - -
Bma03g00651 671 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 278 457 - -
Bma03g00651 671 Pfam RING/Ubox like zinc-binding domain 133 181 - -
Bma03g00651 671 SUPERFAMILY RING/U-box 124 188 - -
Bma03g00651 671 PANTHER CELLULOSE SYNTHASE-LIKE PROTEIN D4 76 226 - -
Bma03g00651 671 PANTHER CELLULOSE SYNTHASE-LIKE PROTEIN D4 235 278 - -
Bma03g00651 671 MobiDBLite consensus disorder prediction 1 37 - -
Bma03g00651 671 PANTHER CELLULOSE SYNTHASE-LIKE PROTEIN D4 458 668 - -
Bma03g00651 671 PANTHER CELLULOSE SYNTHASE-LIKE PROTEIN D4 278 457 - -
Bma03g00651 671 Pfam Cellulose synthase 332 457 IPR005150 GO:0016020|GO:0016760|GO:0030244
Bma03g00651 671 Pfam Cellulose synthase 458 660 IPR005150 GO:0016020|GO:0016760|GO:0030244
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00651 K20924 CSLD; cellulose synthase-like protein [EC:2.4.1.-] - pvy:116127737 816.994
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma03g00651 Bma08g00705 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00651 Bma-Chr3:5342493 Bma10g01078 Bma-Chr10:30875439 2.34E-08 dispersed
Bma03g00651 Bma-Chr3:5342493 Bma08g00705 Bma-Chr8:42731414 5.86E-13 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g317 . . . . . . . . Cmo19g00837 Cmo11g01805 . . . . Sed04g3767 Cpe04g00648 Cpe15g00660 Bhi05g01539 Tan02g0537 Cmetu01g0894 Lac12g0434 Hepe02g0342 . . Cla02g00324 Cam02g0332 Cec02g0332 Cco02g0336 Clacu02g0322 Cmu02g0321 Cre02g0654 . . . . . Csa07g00220 . . Blo04g00615 . . . Bpe15g00770 . Bma03g00651 Bma08g00705 . . . Cma11g01316 Cma19g00820 Car11g01432 Car19g00637 . . . . . . . . . . . . . . . . Lsi11g01314 . Chy01g00562 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0034592 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma03g00651 Bma_Chr03 FPKM 4.46414 4.301609 18.092079 16.890608 27.315649 28.796062 27.762388 15.710443 13.095324 12.716592