Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00652 TTGGAGAAAATGGTGGCCTGTTTCAATGGAAATCCAAGATTATGTCTTATGGTCTTCGTTCTTATCACTGTTCTATTGTCTATGCCCGCCGGAGGGGGCTCGGTGACGCTAAAAAAATATTTAGATTTTGTCACGTTTGACGAAGGAAGCGATAGGCAGTATTTTGGCTTCGCCGGAGATTCATCCATTGACCAAGGTGCTCTCCAGTTGACTCCGGACACTGAGAATACAGCCTTCGGCTACAAAAACAAGTCTGGAAGAATTATGTATAACAAACCCTTCAGGCTCTGGTCATCGGAAAAGGGTGTCGATGGTCATGATGTCATCGCATCGTTTAACTCGTATTTCGTCATTAACAACTACAGAGAGGAGTCGTGGAGCCCCGGCGAGGGATTAGCTTTTCTCATAGCACCAGATTCCGATTCTATTCCGGCCGGGAGCTTCGGCCAGTGGCTCGGCCTCACTAATTCGACTACTGACGGAGAAGCTTCGAACCAGATTGTAGCGGTGGAATTCGATACGGAAAAGCAAGAATTCGACATTGACGATAACCATGTCGGGTTAAACATAAATTCGATTAGGTCAAATAAATCTTTTTCTCTTACCGAAATGGGAATTGAGATTTCCCCAATTCCACCGGCGAATTATAGCGTCTGGATTCAGTACAATGGAAGCTCCCAAGTTATGGAGGTTTTCGTAGCGAAACACAACGATGTGAAACCCGAAAATCCAGTTCTGACTGAGAAGATAAATCTCAAAACCATCTTGAAGCAAGAATCCTACTTCGGATTCGCTGGTTCCACAGGCGATCCAGCGGTTCAGTTGAACTGCGTTCGGGAATGGAGATTGGAGGTGGAAGAGCTCCCGATGGTAAAGAATCAAAAGTTGTTGAAGATTGCGCTAGGCGTTGGTGTTCCGGTGCTCTCAGCCGTAATCCTGATCGGAGTATTTCTCGGATTTGAATACAGAAAGAAGAGAAAGAAGAGGATGGACGAGGAATCCATGGTTGTAGGAAATCTGAAAAGGTTGCCTGGTATGCCGAGGGAGTTCGAGTTCAAGGAGTTGAAGAAGGCCACGAGAAACTTCCATGAAAGCGCAGAGCTGGGAAGAGGAGGATTCGGGGTGGTATACAAAGGAATCCTAGAGGACAGAAATGGCGGAAATGGAGGTGAAACAAGAACTGAGATCGCCGTGAAGCAATTTTCAAGAGATAGCGTGTTGGGTAAAGATGATTTCTTGGCTGAGCTCACCATCATTCACCGGCTCCGGCACAAACATCTCGTCCGATTAGTAGGGTGGTGTTACGAGAGACGAAAGCTTCTTCTGGTCTACGATTACATGCCCAATGGCAGCCTGGAGAAGCACCTCTACTGCAATGATATCCTGAAGGTGCTGAGCTGGAGACGACGATGCAACATTCTGGAATGCGTCGCCTCCGCCCTTCATTATCTCCACAAAGAGTGCGATCAAAAGGTGCTTCACCGTGATCTTAAGGCCTCCAACATATTGCTTGATTCTGATTTCAACGCTCGCCTCGGAGATTTCGGTCTCGCCCGAGCTCTAGATCCCGACAGAAACTCCTACGCCGACATCAAACTCGGCGGAGTTCCTGGCACCATTGGATATGTCGCTCCGGAGTGCTTCCACACCGGTCGAGCCACGCCGGAGTCGGATGTGTTCGGATTCGGAGCTGTCGTGCTCGAAATCGTGTGCGGGAGAAACCCAGGGGTCGGCGTTCAAAGCGGAGAGAACTTCTATAACTTGGTCGATTGGGTTTGGCATCTTCACCGCGACGGACAGATCGAGAAAGCGGTGGACGAGCGGCTGCAGAATGATATCGTGGTTGAAGAAGTGAAGAGACTTCTCCTTCTAGGGCTCGCATGTTCTCACCCTATCGCCGGGGAGCGGCCTGCCACGCATACTATCATTCAAATTATATCTGGAACGTCGCCGGCCCCGTACGTTCCACCATTCCGACCAGTCTTCATTTGGCCGTCGATGAACACCACAGAAGGCACCACCACCGGAACTTCTCTGTCCAGCTCGACAATATCTAACTCTACGCCATCCGCCGGCGTCACGGAAGACCGTGAGGCTCGGTGA 2103 49.55 LEKMVACFNGNPRLCLMVFVLITVLLSMPAGGGSVTLKKYLDFVTFDEGSDRQYFGFAGDSSIDQGALQLTPDTENTAFGYKNKSGRIMYNKPFRLWSSEKGVDGHDVIASFNSYFVINNYREESWSPGEGLAFLIAPDSDSIPAGSFGQWLGLTNSTTDGEASNQIVAVEFDTEKQEFDIDDNHVGLNINSIRSNKSFSLTEMGIEISPIPPANYSVWIQYNGSSQVMEVFVAKHNDVKPENPVLTEKINLKTILKQESYFGFAGSTGDPAVQLNCVREWRLEVEELPMVKNQKLLKIALGVGVPVLSAVILIGVFLGFEYRKKRKKRMDEESMVVGNLKRLPGMPREFEFKELKKATRNFHESAELGRGGFGVVYKGILEDRNGGNGGETRTEIAVKQFSRDSVLGKDDFLAELTIIHRLRHKHLVRLVGWCYERRKLLLVYDYMPNGSLEKHLYCNDILKVLSWRRRCNILECVASALHYLHKECDQKVLHRDLKASNILLDSDFNARLGDFGLARALDPDRNSYADIKLGGVPGTIGYVAPECFHTGRATPESDVFGFGAVVLEIVCGRNPGVGVQSGENFYNLVDWVWHLHRDGQIEKAVDERLQNDIVVEEVKRLLLLGLACSHPIAGERPATHTIIQIISGTSPAPYVPPFRPVFIWPSMNTTEGTTTGTSLSSSTISNSTPSAGVTEDREAR 700
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5351378 5353721 + Bma016946.1 Bma03g00652 79325

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00652 700 ProSiteProfiles Protein kinase domain profile. 362 633 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma03g00652 700 Pfam Legume lectin domain 43 293 IPR001220 GO:0030246
Bma03g00652 700 Gene3D Phosphorylase Kinase; domain 1 347 446 - -
Bma03g00652 700 Pfam Protein tyrosine and serine/threonine kinase 365 607 IPR001245 GO:0004672|GO:0006468
Bma03g00652 700 Gene3D Transferase(Phosphotransferase) domain 1 447 656 - -
Bma03g00652 700 SUPERFAMILY Concanavalin A-like lectins/glucanases 51 288 IPR013320 -
Bma03g00652 700 PANTHER - 16 687 - -
Bma03g00652 700 ProSitePatterns Legume lectins beta-chain signature. 168 174 IPR019825 -
Bma03g00652 700 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE S.5-RELATED 16 687 - -
Bma03g00652 700 MobiDBLite consensus disorder prediction 672 693 - -
Bma03g00652 700 Gene3D - 40 297 - -
Bma03g00652 700 CDD lectin_legume_LecRK_Arcelin_ConA 42 285 IPR001220 GO:0030246
Bma03g00652 700 CDD STKc_IRAK 368 646 - -
Bma03g00652 700 ProSitePatterns Protein kinases ATP-binding region signature. 368 399 IPR017441 GO:0005524
Bma03g00652 700 SMART serkin_6 362 633 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma03g00652 700 MobiDBLite consensus disorder prediction 672 700 - -
Bma03g00652 700 SUPERFAMILY Protein kinase-like (PK-like) 346 673 IPR011009 -
Bma03g00652 700 ProSitePatterns Serine/Threonine protein kinases active-site signature. 492 504 IPR008271 GO:0004672|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00652 - - - cpep:111792914 829.706
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma03g00652 Bma08g00704 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00652 Bma-Chr3:5351378 Bma10g00593 Bma-Chr10:7271495 1.71E-131 dispersed
Bma08g00665 Bma-Chr8:41133132 Bma03g00652 Bma-Chr3:5351378 5.02E-86 dispersed
Bma13g01119 Bma-Chr13:44301359 Bma03g00652 Bma-Chr3:5351378 2.00E-129 wgd
Bma03g00652 Bma-Chr3:5351378 Bma08g00704 Bma-Chr8:42721753 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g321 . . . . . . . . Cmo19g00842 Cmo11g01827 . . . . . Cpe04g00668 Cpe15g00663 Bhi05g01535 . . . . . . Cla02g00321 . . . . . . Cone12ag1284 Cone8ag1348 . . . Csa07g00223 . . . Blo13g00458 . . Bpe15g00769 . Bma03g00652 Bma08g00704 . . . Cma11g01293 Cma19g00825 Car11g01453 Car19g00640 . . . . . . . . . . . . . . . . Lsi11g01317 . Chy01g00557 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006270 1 1 1 3 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66398 PF07714 PK_Tyr_Ser-Thr 1.00E-43 CL0016 Bma PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma03g00652 Bma_Chr03 FPKM 70.375259 76.5756 52.342445 56.93829 34.105431 33.036354 33.364376 88.430794 86.522408 85.928444