Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00653 ATGGACACCGGAGGCAATTCCTTACCTTCGGGTTCTGATGCAGTTAAAAGAAAGGTGTGTTACTTCTATGACCCCGAGGTTGGAAATTACTATTATGGCCAAGGACATCCTATGAAGCCTCATCGCATCAGAATGACCCATGCTCTTCTCGCCCACTATGGATTGCTTCAGCATATGCAGGTTCTCAAGCCCTTTCCTGCGAGGGATAGGGACCTTTGTCGCTTCCATGCTGATGATTACGTATCTTTCCTAAGAACTATTACACCTGAAACCCAACAAGATCAGCTGAGGCAGCTCAAGCGTTTCAATGTTGGCGAGGATTGCCCGGTTTTTGATGGACTGTACTCTTTTTGTCAAACTTCTGCTGGTGGCTCAGTTGGTGGTGCTGTTAAGTTGAACCACAATCTATGTGATATTGCTGTGAATTGGGCTGGTGGACTCCATCATGCTAAAAAGTGTGAGGCTTCAGGTTTTTGCTATGTCAACGATATTGTCCTTGCTATCTTAGAGCTTCTTAAACAGCACGAGCGTGTTTTATATGTTGACATCGATATTCACCACGGAGATGGTGTAGAAGAGGCTTTTTATACAACTGACCGGGTGATGACTGTTTCATTCCACAAATTTGGAGACTATTTCCCCGGTACCGGTGATCTACGTGATATTGGTTATGCAAAAGGAAAGTATTATTCTCTAAATGTTCCACTAGACGATGGTATAGATGATGAGAGCTATCATTTTTTGTTCAAACCAATAATTGGAAAGGTTATGGAAGTTTATAGGCCTGGTGCTGTGGTCCTCCAATGTGGTGCTGACTCCTTATCTGGAGACAGGCTAGGATGCTTCAATCTTTCCATTAAAGGTCACGCAGAGTGTGTTAAGTACATGAGATCGTTTAATGTTCCTCTATTGCTTCTTGGTGGTGGTGGCTACACCATTCGAAATGTTGCTCGATGCTGGTGCTATGAGAGCATCGCTCGATACACGTATATGTCAATTACAATTTATCTTTTTTTTTTTTTTTTTTTAAATTATTATCTCACTCTTATCTGGTTTAACGCCGATGAAGATCAAAATGATCCGAATGAGAGATGGGCGGATCCAGATTCAGATATGGAAGTTGATGAGGATAGAAAGCCTTCACTAAGCAGAGTAAAGAGGGAAATGGTTGAGACTGAGCTCAAAGATCCGGTATTGTCTCCTAATTCTGTGATTTCTTGA 1221 42.26 MDTGGNSLPSGSDAVKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQHMQVLKPFPARDRDLCRFHADDYVSFLRTITPETQQDQLRQLKRFNVGEDCPVFDGLYSFCQTSAGGSVGGAVKLNHNLCDIAVNWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDLRDIGYAKGKYYSLNVPLDDGIDDESYHFLFKPIIGKVMEVYRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKYMRSFNVPLLLLGGGGYTIRNVARCWCYESIARYTYMSITIYLFFFFFLNYYLTLIWFNADEDQNDPNERWADPDSDMEVDEDRKPSLSRVKREMVETELKDPVLSPNSVIS 406
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5355881 5358039 + Bma016947.1 Bma03g00653 79326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00653 406 CDD HDAC_classI 22 323 - -
Bma03g00653 406 Gene3D Histone deacetylase domain 15 391 IPR037138 -
Bma03g00653 406 Pfam Histone deacetylase domain 36 322 IPR023801 -
Bma03g00653 406 PRINTS Histone deacetylase signature 71 89 IPR003084 GO:0004407|GO:0016575
Bma03g00653 406 PRINTS Histone deacetylase signature 223 236 IPR003084 GO:0004407|GO:0016575
Bma03g00653 406 PRINTS Histone deacetylase signature 164 180 IPR003084 GO:0004407|GO:0016575
Bma03g00653 406 PRINTS Histone deacetylase signature 123 143 IPR003084 GO:0004407|GO:0016575
Bma03g00653 406 PRINTS Histone deacetylase signature 102 119 IPR003084 GO:0004407|GO:0016575
Bma03g00653 406 PRINTS Histone deacetylase signature 38 55 IPR003084 GO:0004407|GO:0016575
Bma03g00653 406 PRINTS Histone deacetylase signature 240 258 IPR003084 GO:0004407|GO:0016575
Bma03g00653 406 SUPERFAMILY Arginase/deacetylase 18 347 IPR023696 -
Bma03g00653 406 PANTHER HISTONE DEACETYLASE 19 3 324 - -
Bma03g00653 406 PRINTS Histone deacetylase superfamily signature 145 168 IPR000286 -
Bma03g00653 406 PRINTS Histone deacetylase superfamily signature 262 272 IPR000286 -
Bma03g00653 406 PRINTS Histone deacetylase superfamily signature 177 192 IPR000286 -
Bma03g00653 406 PANTHER HISTONE DEACETYLASE 3 324 - -
Bma03g00653 406 MobiDBLite consensus disorder prediction 362 389 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma03g00653 Bma08g00825 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00653 Bma-Chr3:5355881 Bma08g00086 Bma-Chr8:1007157 0 dispersed
Bma03g00653 Bma-Chr3:5355881 Bma08g00701 Bma-Chr8:42420903 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00653 K06067 - pvy:116142157 704.901