Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00654 ATGGCATCGAAACCTAGTCCAACGGATGAAAAAACTGGTTTGAGCGAGATGACCTATAAATCTGAAGCATCCTCTATGGAGCCACCGCCACCCTCTTCCACAGAATCATCCCCTCGTGCTGGCAATGATCCTAGCATTAAGGATGCATGTAAAACGTCCTCTAGGCAGCCATCGGCAGCCTCTTCCCAGGGTGCTGAGTTTCCTACAAGCCCTTTTGATTTCTCGGTCCTAAATGACCTGCTTAATGATCCTAGCATGAAGGAAGCATTTGTAACATCCTCTATGCAGCCACCCGCTGCTTCTTCCCAGGGTGCTGGGATTCCTACAAACCCTTTCGATTTCTCAGCCATGAGTGGCCTTCTTAATGATCCTAGCATGAAGGAAGCATTTGAAGCATCCTCTATGCAGCCACCCACAGCTTCTTCTCAGGGTGCTGGGTTTCCTACGAACCCTTTCGATTTCTCGGCCATGAGTGGTCTGCTTAATGATCCGAGCATTAAGGAGTTAGCAGAACAGATAGCAAAAGATCCTGCATTCAACCAGATGGCTGAGCAGCTTCAGAAAACTTTTCAAGGTGGATCAGTCGAACAGGGAATCCCCCAGTTTGATTCACAACAATATTATTCCACAATGCAACAGGTCATGCAGAATCCTCAATTTATGTCTATGGCTGAGCACCTTGGTAGTGCATTAATGCAGGACCCATCTATGTCTAGAATGCTAGAGACTTTTGCAAATCCGTCAAGTAAACAGCTTGAAGAACGAATGTCGCGTCTTAGAGAAGATCCTTCCTTGAAGCCTATTTTGGAGGAGATAGAGAATGGTGGACCAGCTGCTATGATGAAGTACTGGAATGATAAAGATGTCTTGCAGAAATTAGGTGAAGCAATGGGTCTTGCAGCTACGGGAGATGCAGTAGCTGCTGACAACTCTGCAGTAGATGATGCTGAAGAAGTGATAAATGAGGACGAGTCAATAGTTCATAATACGGCTAGTGTTGGCGATGTTGAGGGATTGAAAGCTGCTCTGGCCTCTGGTGCCAACAAGGACGAAGAAGATTCAGAAGGAAGAACAGCATTGCATTTTGCATGTGGTTATGGCGAGGTGAAGTGTGCTCAGATTCTCCTGGAAACTGGAGCTGCCGTTGATGCTTTGGACAAGAACAAGAACACAGCACTTCATTATGCCGCTGGTTATGGCAGAAAAGAGTGTGTGGCTCTTCTGCTGGAAAACGGAGCTGCTGTCACTCTCCAGAATATGGATGGAAAAACTCCGATTGATGTTGCCAAGCTAAACAGCCAACATGAAGTGCTGAAACTACTCGAGAAGGATGCATTCCTATAA 1344 46.35 MASKPSPTDEKTGLSEMTYKSEASSMEPPPPSSTESSPRAGNDPSIKDACKTSSRQPSAASSQGAEFPTSPFDFSVLNDLLNDPSMKEAFVTSSMQPPAASSQGAGIPTNPFDFSAMSGLLNDPSMKEAFEASSMQPPTASSQGAGFPTNPFDFSAMSGLLNDPSIKELAEQIAKDPAFNQMAEQLQKTFQGGSVEQGIPQFDSQQYYSTMQQVMQNPQFMSMAEHLGSALMQDPSMSRMLETFANPSSKQLEERMSRLREDPSLKPILEEIENGGPAAMMKYWNDKDVLQKLGEAMGLAATGDAVAADNSAVDDAEEVINEDESIVHNTASVGDVEGLKAALASGANKDEEDSEGRTALHFACGYGEVKCAQILLETGAAVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHEVLKLLEKDAFL 447
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5359052 5363608 - Bma016948.1 Bma03g00654 79327

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00654 447 PANTHER ANKYRIN REPEAT FAMILY PROTEIN 141 447 - -
Bma03g00654 447 ProSiteProfiles Ankyrin repeat region circular profile. 355 387 - -
Bma03g00654 447 MobiDBLite consensus disorder prediction 1 69 - -
Bma03g00654 447 MobiDBLite consensus disorder prediction 1 75 - -
Bma03g00654 447 ProSiteProfiles Ankyrin repeat profile. 388 420 IPR002110 GO:0005515
Bma03g00654 447 Gene3D - 315 392 IPR036770 -
Bma03g00654 447 PANTHER - 100 137 - -
Bma03g00654 447 SUPERFAMILY Ankyrin repeat 317 441 IPR036770 -
Bma03g00654 447 PANTHER ANKYRIN REPEAT FAMILY PROTEIN 100 137 - -
Bma03g00654 447 Pfam STI1 domain 255 298 IPR041243 -
Bma03g00654 447 Pfam Ankyrin repeats (3 copies) 330 419 IPR002110 GO:0005515
Bma03g00654 447 ProSiteProfiles Ankyrin repeat profile. 355 387 IPR002110 GO:0005515
Bma03g00654 447 PANTHER - 141 447 - -
Bma03g00654 447 SMART ANK_2a 355 384 IPR002110 GO:0005515
Bma03g00654 447 SMART ANK_2a 388 417 IPR002110 GO:0005515
Bma03g00654 447 SMART ANK_2a 322 351 IPR002110 GO:0005515
Bma03g00654 447 ProSiteProfiles Ankyrin repeat region circular profile. 388 419 - -
Bma03g00654 447 Gene3D - 393 444 IPR036770 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00654 - - - qsu:112014796 528.865
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma03g00654 Bma08g00700 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00778 Bma-Chr2:41368533 Bma03g00654 Bma-Chr3:5359052 5.34E-13 dispersed
Bma03g00654 Bma-Chr3:5359052 Bma04g00693 Bma-Chr4:7027189 1.02E-08 dispersed
Bma03g00654 Bma-Chr3:5359052 Bma08g00700 Bma-Chr8:42416233 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g332 . . . . . Bpe12g00164 . . . . Cma02g00314 . Car02g00195 Car20g00595 Sed01g0615 . . Bhi05g01518 Tan02g0522 Cmetu05g1570 Lac12g0422 Hepe02g0332 . . Cla02g00315 Cam02g0322 Cec02g0323 Cco02g0325 Clacu02g0314 Cmu02g0313 Cre02g0645 Cone12ag1280 Cone8ag1351 Cone3ag1265 . . Csa07g00229 . . Blo04g00617 Blo13g00584 . . Bpe15g00922 . Bma03g00654 Bma08g00700 . Cmo02g00308 . . . . . . Cpe05g01326 . . . . . . . Cla02g01042 . . . . . . Lsi11g01322 . Chy01g00551 Cme11g01009
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002762 0 3 2 2 2 2 2 1 1 1 2 1 1 2 2 1 1 3 2 1 2 2 2 2 2 2 2 7 3 1 57
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma03g00654 Bma_Chr03 FPKM 33.452614 32.499538 29.471167 31.991587 0.0 0.0 0.0 12.802249 0.0 11.144504