Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00658 GGAAACATGGGTTATATATGCGATTTCTGTGGGGATCAAAGGTCAATGGTTTATTGCCGTTCCGATGCTGCCTGTTTGTGCTTATTGTGTGATCGTAAGGTCCACTCGGCTAATGCCTTGTCAAGGCGCCATATGAGAACACTATTATGCGAGAAGTGCAATTTACAGCCTGCATTGGTAAGATGTGTTGAAGAGGATTTGGATTTGAGTCTTGAAACTTTTGAGGAACTATTTGGTGTAGCCAGTAAGCACGAAGAGCTTCTGGAGAATGGTGGGCTCGATAGCTTGTTCGGGAAAAAAGGCATATCGACTGTTGATTTCGATGGCCATGGTGCTGCTGCCACTGAGTTTGTAATATTCTGCTTAATCTTCAGCATTCCCGTCTTATCGCTTCAAATTAAATTGGCTAACAGAATATTGTTCCTCGTTTGCATCTTTAACTCATCTACTCTAACACTGAAAAAAAAAAAAGAAAGTTTACATGTGCTGAACTCAAATGTTCTTCTCAAGGGGTCGTCAGGCGCATTAGTAAATGCAATGCAGCCAGCAAGCAGCAATGCTGCATCTGCAGATTCCGTCGTGAGTACTAAAACAGACTCAATTCTTTGTTGTAATTCAAGGACAGCACTTTCAACCCTCTCGTTTTCTGGCCCCACTGGAGAAACTAGTAGTGGAGGTCATCACGATTGCGGAGTTTCATCAATGATCTTAATGGGAGAACCTCCGTGGGGTCAACTGTGTCCCGAGACTCTCTGCCCATCTGGTAATCGTAGTAATGCTGTTATGCGATACATTGAAAAGAAAAAGACGCGCAAGTTTGAGAAAAAAGTCAGGTATGAATCTCGAAAAGCAATGGCTGACGGGAGGAGGCGGGTCAAAGGACAGTTTGTCAAAGCTGGATATGCTCATGATTATGATCCATTGTGCAAAACCAGAAGCTATTAA 945 43.17 GNMGYICDFCGDQRSMVYCRSDAACLCLLCDRKVHSANALSRRHMRTLLCEKCNLQPALVRCVEEDLDLSLETFEELFGVASKHEELLENGGLDSLFGKKGISTVDFDGHGAAATEFVIFCLIFSIPVLSLQIKLANRILFLVCIFNSSTLTLKKKKESLHVLNSNVLLKGSSGALVNAMQPASSNAASADSVVSTKTDSILCCNSRTALSTLSFSGPTGETSSGGHHDCGVSSMILMGEPPWGQLCPETLCPSGNRSNAVMRYIEKKKTRKFEKKVRYESRKAMADGRRRVKGQFVKAGYAHDYDPLCKTRSY 314
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5393850 5395983 + Bma016952.1 Bma03g00658 79331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00658 314 CDD Bbox1_BBX-like 6 49 - -
Bma03g00658 314 SMART bboxneu5 2 49 IPR000315 GO:0008270
Bma03g00658 314 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 66 119 - -
Bma03g00658 314 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 3 69 - -
Bma03g00658 314 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 9-LIKE 3 69 - -
Bma03g00658 314 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 9-LIKE 166 314 - -
Bma03g00658 314 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 9-LIKE 66 119 - -
Bma03g00658 314 Pfam CCT motif 257 299 IPR010402 GO:0005515
Bma03g00658 314 ProSiteProfiles Zinc finger B-box type profile. 2 49 IPR000315 GO:0008270
Bma03g00658 314 ProSiteProfiles CCT domain profile. 257 299 IPR010402 GO:0005515
Bma03g00658 314 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 166 314 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma03g00658 Bma12g00873 CCT
Bma02g01294 Bma03g00658 CCT
Bma03g00658 Bma08g00690 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00658 Bma-Chr3:5393850 Bma15g00012 Bma-Chr15:172318 1.23E-18 dispersed
Bma12g00873 Bma-Chr12:39803012 Bma03g00658 Bma-Chr3:5393850 8.35E-32 wgd
Bma03g00658 Bma-Chr3:5393850 Bma08g00690 Bma-Chr8:42107098 1.93E-35 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57011 PF06203 CCT 2.70E-17 CL0281 Bma TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00658 - - pop:7469344 202.601