Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bma03g00660 | ATGGGTTTGTCCAGTCTTCCTGCTCCATCCTCAGGAGTTCTCTTCATACTTATAATAAACACTGCCTTTTGCATTTCCGTTCTTCAATCAATTCTTCATGTCTTCGGCATTCAAATCTCATCGCCCTCTCCGCCACCACCTTCAATCTGGGTCGAAAACCTCTCAGAACCCATTGAGTTTCATCTCGATTCCTCGTGCAATTACGTCGAGAAGTTTCGCGACCTTATTCCGGTGGTTCGGTTTGAAGAAGCACTAGCCTGTAAATTTTCAGAGCACGAATGCTCAGTTTGCCTCACTCAGTTTGAACCCAAATCAGAGATAAACCGCTTGTCTTGCGGCCATTTATTCCACAAAATGTGCTTGCAGAAGTGGTTGGCCTATTCGAATTTTACGTGTCCTCTTTGCCGGATTACTCTAATGGTGGAAGAAGAGAGACTTCATGCTTTTGATGAAGATTTATCATATTCCTGTTAG | 474 | 43.67 | MGLSSLPAPSSGVLFILIINTAFCISVLQSILHVFGIQISSPSPPPPSIWVENLSEPIEFHLDSSCNYVEKFRDLIPVVRFEEALACKFSEHECSVCLTQFEPKSEINRLSCGHLFHKMCLQKWLAYSNFTCPLCRITLMVEEERLHAFDEDLSYSC | 157 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 5401017 | 5401503 | + | Bma016954.1 | Bma03g00660 | 79333 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bma03g00660 | 157 | Pfam | Ring finger domain | 93 | 136 | IPR001841 | - | |
| Bma03g00660 | 157 | PANTHER | - | 1 | 144 | IPR044249 | - | |
| Bma03g00660 | 157 | ProSiteProfiles | Zinc finger RING-type profile. | 94 | 136 | IPR001841 | - | |
| Bma03g00660 | 157 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 71 | 141 | IPR013083 | - | |
| Bma03g00660 | 157 | SMART | ring_2 | 94 | 135 | IPR001841 | - | |
| Bma03g00660 | 157 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE XERICO-RELATED | 1 | 144 | - | - | |
| Bma03g00660 | 157 | SUPERFAMILY | RING/U-box | 78 | 141 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Bma02g01295 | Bma03g00660 | CCT | |
| Bma03g00660 | Bma12g00872 | CCT |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bma02g01295 | Bma-Chr2:55130209 | Bma03g00660 | Bma-Chr3:5401017 | 6.44E-31 | dispersed | |
| Bma03g00660 | Bma-Chr3:5401017 | Bma05g01183 | Bma-Chr5:50957905 | 1.05E-15 | dispersed | |
| Bma04g00894 | Bma-Chr4:11862208 | Bma03g00660 | Bma-Chr3:5401017 | 1.08E-08 | transposed | |
| Bma12g00872 | Bma-Chr12:39798997 | Bma03g00660 | Bma-Chr3:5401017 | 1.62E-43 | wgd | |
| Bma03g00660 | Bma-Chr3:5401017 | Bma08g00688 | Bma-Chr8:42059838 | 8.48E-24 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bma03g00660 | K16285 | - | csv:101216645 | 176.022 |