Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00730 ATGGCCAACGTCCAAGAGAGAGTATCATTTGGACTGTGGATTAAGACGGTGAGCCTGCTGCTCTTTGGAAAAGCTCTGGTCGAGTCCGCTACTCTCAAAAGCAACGTCTCGGCAGCGCATTGGCTTCCCGCTACTGCCACTTGGTACGGAAACGCAGAAGGCGACCGAAGCGACGGAGGAGCTTGTGGGTATGGAAACTTAGTGGACGTGAAGCCATTCAGAGCAAGGGTAGGTGCAGTGAGCCCCGTTCTGTTTCAGAATGGCGAAGGGTGTGGTGCTTGCTTCAAGGTAAAGTGTCTAGACAAAACCATATGCAGTAGACGAGCCGTGACGATAATCGTGACGGACGAGTGCCCCGGTGGCTACTGCGCCGGTGGGCGAACCCACTTCGACCTCAGTGGTGCTGCCTTCGGCCGCATGGCTGTAGCCGGTGATGGTGGTCAGCTCAGAAACCGAGGCGAAATCCCAGTCATTTACAGACGGACTCAATGCAAATATCCTGGGAAGAGCATAGCTTTCCACGTAAACGAAGGCTCAACAGATTACTGGCTCTCTCTCCTGGTGGAGTTCGAGGACGGCGATGGAGATATTGGATCGATGCACATAAGAGAAGCAAGGTTTGAGGAATGGTTGGAGATGAATCACGTATGGGGTGCCAATTGGTGTATCATAGGAGGGCCTCTAAAAGGGCCATTTTCGGTGAAACTAACGACACTGTCTACAGCTACAAGTCTGTCAGCCAGAGACGTGATTCCCAGCAACTGGTCTCCTAAAGCTACGTATCCATCTCGCTTGAAGTTCATCGCCTAA 810 52.47 MANVQERVSFGLWIKTVSLLLFGKALVESATLKSNVSAAHWLPATATWYGNAEGDRSDGGACGYGNLVDVKPFRARVGAVSPVLFQNGEGCGACFKVKCLDKTICSRRAVTIIVTDECPGGYCAGGRTHFDLSGAAFGRMAVAGDGGQLRNRGEIPVIYRRTQCKYPGKSIAFHVNEGSTDYWLSLLVEFEDGDGDIGSMHIREARFEEWLEMNHVWGANWCIIGGPLKGPFSVKLTTLSTATSLSARDVIPSNWSPKATYPSRLKFIA 269
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6522555 6523834 - Bma017024.1 Bma03g00730 79403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00730 269 PRINTS Major pollen allergen Lol pI signature 239 256 IPR005795 GO:0005576|GO:0019953
Bma03g00730 269 PRINTS Major pollen allergen Lol pI signature 141 156 IPR005795 GO:0005576|GO:0019953
Bma03g00730 269 PRINTS Major pollen allergen Lol pI signature 173 188 IPR005795 GO:0005576|GO:0019953
Bma03g00730 269 PRINTS Major pollen allergen Lol pI signature 189 204 IPR005795 GO:0005576|GO:0019953
Bma03g00730 269 PRINTS Major pollen allergen Lol pI signature 119 134 IPR005795 GO:0005576|GO:0019953
Bma03g00730 269 PRINTS Major pollen allergen Lol pI signature 79 90 IPR005795 GO:0005576|GO:0019953
Bma03g00730 269 PANTHER EXPANSIN-B3 27 268 - -
Bma03g00730 269 PRINTS Expansin/Lol pI family signature 210 224 IPR007118 GO:0005576
Bma03g00730 269 PRINTS Expansin/Lol pI family signature 40 55 IPR007118 GO:0005576
Bma03g00730 269 PRINTS Expansin/Lol pI family signature 58 76 IPR007118 GO:0005576
Bma03g00730 269 PRINTS Expansin/Lol pI family signature 152 168 IPR007118 GO:0005576
Bma03g00730 269 PRINTS Expansin/Lol pI family signature 249 263 IPR007118 GO:0005576
Bma03g00730 269 PRINTS Expansin/Lol pI family signature 81 99 IPR007118 GO:0005576
Bma03g00730 269 Pfam Lytic transglycolase 79 158 IPR009009 -
Bma03g00730 269 SUPERFAMILY Barwin-like endoglucanases 34 168 IPR036908 -
Bma03g00730 269 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 182 263 IPR007117 -
Bma03g00730 269 Gene3D - 165 264 IPR036749 -
Bma03g00730 269 PANTHER EXPANSIN-LIKE PROTEIN B1 27 268 - -
Bma03g00730 269 SUPERFAMILY PHL pollen allergen 169 262 IPR036749 -
Bma03g00730 269 Pfam Expansin C-terminal domain 171 252 IPR007117 -
Bma03g00730 269 SMART dpbb_1 77 159 IPR007112 -
Bma03g00730 269 Gene3D - 24 164 IPR036908 -
Bma03g00730 269 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 59 169 IPR007112 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g01371 Bma-Chr2:56088442 Bma03g00730 Bma-Chr3:6522555 4.04E-144 dispersed
Bma03g00730 Bma-Chr3:6522555 Bma06g01384 Bma-Chr6:50611607 3.64E-65 dispersed
Bma03g00730 Bma-Chr3:6522555 Bma08g00575 Bma-Chr8:34100714 1.57E-171 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00730 K20628 - pvy:116111685 437.573