Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00756 ATGGAGCCTTTGGAAGTTATTCATGCGACGAACTCCGGTAACGATCCGGAACTTGGGTCCAACAATTACCTTTCTCGGAGTCCAGATCTTGATCCGGCGATTTCTGATTCTAATCGAGACGCTGGTATTTATTCGGAGCTTCAAAAATTAAAACTGAAGGAGGAGGATGGGGAGGTCGGAAAGGATTCCGTTGAAGGTGAAGTAGAAAATGTTCCTGAGAAGATCGAAGAGAGTGGCGGAGATGGAGATAGCCAAAATGGGTGGGATTACGGGAATGAGAATGAGAATTCAGGGGGTTGGGATGGGGATGGCGAATGGGAAGTGGAGAAGAAGGATGAGAGAAGTGAAGGAAGTTACCAATACCCTCTGAGACCTGACGCTGAAGATTGTGCGTTTTACCTGAAGACCGGAGCTTGTAAGTTCGGACCCCATTGCAAGTTCAATCACCCAGTCCAGAGACATAATCAGGTTAGAATCTCTTCATCGGAAGATTTGGTACCACACCCCAGATCTACGGAATGCAAGTATTACCTGAAGATGGGTGGCTGTAAGTTTGGAAAAGCCTGTAGATTCAACCACACAAGACCCAAAGGATCTGATGGGTCAGTCACAGAGCTCAACTTTCTGGGACTGCCAGTCCGACCAGGTGAGAAAGAGTGTCCCTACTATATGCGCACTGGCTCCTGCAAGTATGGAGCAAGCTGCAAGTTTAATCATCCCGACCCTACTGCCTCCTCTGTTGAATCTAACTATCAAGGCTTGGTCGATGAGAGATTGCTATCACCATATGGCGCTTCAGAATCAGCAATTACACCCTGGTCTTCATCAAGGACTGGGAATGAAACTGTTCCATTTGTCCCTGTGGTAATTTCTCCTTCTCTAAGCACTCCTCAAAATTCAGAATGGATCTCAAATGCTCATTTATATCCATCAGAAAGGAGCATGTTTCAGCCAGCAGGTATTGTTGTGAATAGCCATGTAAAGGAAACCAAGCTCCTTAAGCATCATCAGCAGCAGATGCAGGGAGAAGAATTTCCCGAACGATCAGGTCAGCCTGAATGCAGCTACTTTCTAAGAACAGGTGACTGCAAGTTTAAATATACTTGCAAATATCACCATCCCAAAAGTAGGAACCTGAAGTCACCTCCATGCATACTCAGTGACAATGGCCTGCCTTTGAGACCTGGTCAGAATGTCTGCACGTTTTATAGTCGATATGGCATTTGCAAATTCGGTCCAGCTTGTAAATTTGACCATCCAATAGTATTAGAGTATTCAACCAGACCCTCACAGTAA 1296 45.6 MEPLEVIHATNSGNDPELGSNNYLSRSPDLDPAISDSNRDAGIYSELQKLKLKEEDGEVGKDSVEGEVENVPEKIEESGGDGDSQNGWDYGNENENSGGWDGDGEWEVEKKDERSEGSYQYPLRPDAEDCAFYLKTGACKFGPHCKFNHPVQRHNQVRISSSEDLVPHPRSTECKYYLKMGGCKFGKACRFNHTRPKGSDGSVTELNFLGLPVRPGEKECPYYMRTGSCKYGASCKFNHPDPTASSVESNYQGLVDERLLSPYGASESAITPWSSSRTGNETVPFVPVVISPSLSTPQNSEWISNAHLYPSERSMFQPAGIVVNSHVKETKLLKHHQQQMQGEEFPERSGQPECSYFLRTGDCKFKYTCKYHHPKSRNLKSPPCILSDNGLPLRPGQNVCTFYSRYGICKFGPACKFDHPIVLEYSTRPSQ 431
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6898330 6901942 - Bma017058.1 Bma03g00756 79429

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00756 431 MobiDBLite consensus disorder prediction 13 32 - -
Bma03g00756 431 SMART c3hfinal6 214 241 IPR000571 GO:0046872
Bma03g00756 431 SMART c3hfinal6 124 151 IPR000571 GO:0046872
Bma03g00756 431 SMART c3hfinal6 348 375 IPR000571 GO:0046872
Bma03g00756 431 SMART c3hfinal6 168 195 IPR000571 GO:0046872
Bma03g00756 431 SMART c3hfinal6 394 421 IPR000571 GO:0046872
Bma03g00756 431 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 172 193 IPR000571 GO:0046872
Bma03g00756 431 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 128 150 IPR000571 GO:0046872
Bma03g00756 431 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 396 420 IPR000571 GO:0046872
Bma03g00756 431 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 216 240 IPR000571 GO:0046872
Bma03g00756 431 ProSiteProfiles Zinc finger C3H1-type profile. 348 376 IPR000571 GO:0046872
Bma03g00756 431 Gene3D - 103 164 - -
Bma03g00756 431 SUPERFAMILY CCCH zinc finger 216 242 IPR036855 GO:0046872
Bma03g00756 431 ProSiteProfiles Zinc finger C3H1-type profile. 214 242 IPR000571 GO:0046872
Bma03g00756 431 Pfam RNA-binding, Nab2-type zinc finger 354 374 - -
Bma03g00756 431 Gene3D - 333 422 - -
Bma03g00756 431 MobiDBLite consensus disorder prediction 103 119 - -
Bma03g00756 431 ProSiteProfiles Zinc finger C3H1-type profile. 124 152 IPR000571 GO:0046872
Bma03g00756 431 PANTHER PROTEIN PHOSPHATASE RELATED 25 421 - -
Bma03g00756 431 SUPERFAMILY CCCH zinc finger 168 196 IPR036855 GO:0046872
Bma03g00756 431 SUPERFAMILY CCCH zinc finger 124 155 IPR036855 GO:0046872
Bma03g00756 431 MobiDBLite consensus disorder prediction 54 80 - -
Bma03g00756 431 Gene3D - 167 252 - -
Bma03g00756 431 SUPERFAMILY CCCH zinc finger 391 420 IPR036855 GO:0046872
Bma03g00756 431 MobiDBLite consensus disorder prediction 54 120 - -
Bma03g00756 431 ProSiteProfiles Zinc finger C3H1-type profile. 169 196 IPR000571 GO:0046872
Bma03g00756 431 MobiDBLite consensus disorder prediction 1 39 - -
Bma03g00756 431 ProSiteProfiles Zinc finger C3H1-type profile. 394 422 IPR000571 GO:0046872
Bma03g00756 431 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 13-RELATED 25 421 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00756 - - - cmo:103484086 432.95
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma03g00756 Bma06g00242 CCT
Bma03g00756 Bma06g00242 ECH
Bma03g00756 Bma08g00542 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00756 Bma-Chr3:6898330 Bma14g01187 Bma-Chr14:17621737 7.88E-76 dispersed
Bma03g00756 Bma-Chr3:6898330 Bma06g00242 Bma-Chr6:3239740 8.85E-10 wgd
Bma03g00756 Bma-Chr3:6898330 Bma08g00542 Bma-Chr8:32506086 2.89E-61 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi12g446 . . . . Bpe12g00272 Bpe15g00665 Bma03g00756 Bma08g00542 . . Cma02g00061 Cma20g00237 Car02g00049 Car20g00206 . . . . . . . . . . Cla02g01773 Cam02g1874 Cec02g1898 Cco02g1938 Clacu02g1856 Cmu02g1802 Cre02g2121 . . . . Lsi10g01567 . Chy11g00954 . Blo04g01216 Blo13g00338 Bda14g00777 Bda15g00866 . . . . Sed01g0709 Cmo02g00060 Cmo20g00257 . . . . Cpe16g00747 . Bhi10g01056 Tan05g0681 Cmetu11g1667 . Hepe08g0589 . . . . . . . . . Lsi11g01581 Csa06g01349 . Cme11g01510
Vvi17g893 Blo04g00708 Blo16g00248 . . . Bpe13g00218 Bma06g00242 . Cmo13g00808 Cmo18g00184 . . . . . Cpe20g00333 . . . . . . . . . . . . . . . Cone2ag0950 Cone16ag0051 . . Lsi02g00466 Csa01g00921 Chy12g01205 Cme12g01626 . . Bda11g01626 Bda14g00777 . Bpe15g00167 Bma03g00756 . Sed08g2465 . . Cma13g00777 Cma18g00208 Car13g00625 Car18g00202 Cpe09g00988 . Bhi08g01694 Tan05g2898 Cmetu12g0034 Lac10g0537 Hepe07g2163 . . Cla03g00322 Cam03g0338 Cec03g0330 Cco03g0344 Clacu03g0340 Cmu03g0946 Cre03g0639 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004285 3 1 3 2 2 1 2 1 1 1 1 1 1 1 1 1 1 3 2 1 1 1 1 1 1 2 1 2 1 2 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57021 PF00642 zf-CCCH 9.30E-09 CL0537 Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma03g00756 Bma_Chr03 FPKM 19.867205 20.883926 21.508656 22.073483 9.853909 7.775173 8.765602 12.594649 10.496181 11.635332