Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00758 ATGGCATCCAATGAAGGGTTTCTTACGTATGAGCAGCGGGAAAAGTTAAAAATAGCAAGCCTAAATTTGGAGAACCTTTCGTCATCACCAAAATCTCCTACATCCTTGCTTCCTGAGCATTTTGTAAAGGCGCCGACAGGTGGTAAAGCACCAACTGCTGGGATTGCTGTAAGACATGTCCGAAGGTCACATTCAGGAAAGTTTGTGAGAGTGAAGAAGGATGGAGCTGGTGGTAAGGGTACATGGGGGAAGCTACTTGACACTGATGGTGAATCACGTGTTGATAGAAATGATCCTAATTATGACAGTGGCGAGGAACCATATCAACTTGTTGGATCGACTATTTCCGACCCCCTAGATGAATACAAGAAAGCTGTTGTCTCTATGATAGAGGAATACTTCAGTAATTGCGACGTAGAATTAACAGCATCTGAACTAAAAGAACTAGGCTCAAGTGAATACCATCCTTACTTTATTAAGCGGCTGGTTTCAATGGCAATGGACAGGCATGACAGGGAGAAGGAAATGGCTTCCGTTCTACTTTCATCTTTATATGCTGATGTTATTAGTCCTGCCCAAATTAGAGATGGGTTTTTTATGCTGCTTGAATCCGCTGATGATCTTGCTGTGGACATATTGGACACAGTTGATATCCTTGGTTTGTTCCTAGCTCGAGCTGTGGTTGATGACATCCTTCCTCCAGCTTTTCTTACTAGAGCCAAAAAAGCACTCCAAGAATCTTCCAAAGGGTTTCAGGTTATACAAACAGCCGAGAAAAGTTATTTGTCTGCTCCGCATCATGCAGAACTTATAGAGAAGAAATGGGGAGGCTGTACTCACATTACAGTTGAGGAAGTGAAGAAGAAGATTGCTGATCTTTTGAGGGAATATGTTGAGAACGGAGATACTTTTGAAGCTTGTAGGTGCATAAGGGAGTTGGGTGTTTCATTCTTTCATCATGAGGTTGTAAAGCGGGCATTAATTCTTGCAATGGAAATCAGAACAGCAGAGCCATTGATAATGAAGCTGCTGAAAGAAACTGCTGAGGAAGGTCTCATCAGTTCCAGTCAGATGATGGTGAAAGGGTTTTCTCGTCTGGCTGAGAGCCTTGATGACCTTGCTCTTGACATTCCATCTGCAAAATCCCTGTTCCAATCCCTCATTCCTCGGGCCATATCAGAAGGATGGCTTGATGCTTCATTTATGAATTGTTCAAGTGAAGATGGCGGTGAACGGGGCAAAGATGAAAAGGTGAAGCGCTATAAGCAAGAAGCTGTGGCTATAATTCATGAATATTTTTTATCAGATGATATTCCTGAATTAATTAGGAGTCTTGAAGATTTTGGGGCACCAGAATATAACCCAATATTTTTGAAGAAGTTGATAACCCTTGCTTTGGACAGAAAGAACAGAGAAAAGGAAATGGCTTCTGTCCTTCTGTCTGCTCTTCACATTGAGATATTCTCAACTGAAGATATTGTTAATGGTTTTACGATGCTTCTGGAGTCGGCAGAAGACACGGCACTTGACATTTTAGATGCTTCTAATGAGCTTGCACTCTTTCTGGCCAGGGCTGTCATCGATGACGTCTTGGCTCCACTGAATCTAGAGGAGATTGCTATCAGGTTGCCCGCTGTTTGTGCTGGTAACGAGACAATTCGAATGGCACAATCTCTTATTGCTGCCCGTCATGCTGGTGAGAGGTTGCTGAGGTGTTGGGGTGGTGGAACTGGATGGGCTGTTGAAGATGCAAAAGACAAGATACAGAAACTTTTGGAGGAGTACGAAAGTGGAGGTGTCGTGGGTGAGGCTTGCCAGTGCATTCGCGACCTTGGGATGCCTTTCTTCAACCACGAGGTAGTGAAAAAGGCATTAGTTATGGCCATGGAAAAGAAAAACGATGGAATGCTCAATCTTTTGCAAGAGTGTTTCGGGGAAGGTCTCATCACTATCAATCAAATGACCAAAGGCTTCACTCGGATCAAAGACGGGCTTGAAGACCTTGCTCTTGACATCCCAAATGCAAAAGAGAAATTCGGGTTGGCTCATGTAGCAAGGAAGATGCCAAAAAATGCCCATGCTCATTTTATTCTTGGCCTAATGTACCAAAGAGTTGGGCAGCCACAGAAGGCAGTTGCAGCATACGAGAAGGCAGAGGAGATCTTACTTCGTTCTGATTCTGAGATCGATAGGCCAGAATTTCTGTCAATGGTTCAAATCCACCATGCACAGTGCCTTCTACTAGAAACTGATTGGGATAGGTCAGATAAAGAACTTGAGCGTGAAGAGCTAGAGGAAATTCTCAATAAACTTAAGGAGTCTATGCAATCTGATGTTAGACAGGCAGCTTTATGGAATACTGTAGGCTTGATGCATCTTACAACTGGTCGTCTGCAGAATGCTATTGCTGTTTTTTCTTCTTTGTTGAGCATTGTTCCCGACAACTATGATTGCCTTGGAAACCTTGGAATTGCTTATCTTCAAAGTGGAAATGTGGAACAATCAGAAAAATGTTTTCAAGAATTAATCTTGAAGGATCAAAATCATCCTGCTGCCTTAATCAACTATGCTGCTCTTCTGTTATGCAAGTATGGTGCAAATGTTGCAGGTGCTGGGGCAAATGCTGGGGAAGGATCTTCAGTGAATCAGATCAAAGGTATGATTGTTGCAAAAGAGTGTTTGCTGACAGCTTTGAAAGCAGATCCAAAAGCGGCTCATTTATGGGCAAATCTTGCTAATGCGTACCATATTATTGGTGATCACAGAAGTTCTGGAAAGTGCTTGGAGAAGGTGGCAAAACTTGAACCCAATTGCATGTCTATGCGGTATTCCATTGCTGTGCACCGAATAAAGGATGCAGAGAGATCCCAAGATCCAAGTGAACAGCTTGCCTGGGCAGGAAACGAAATGGCCTCAATAATAAGAGATGGAGATAGTTCTGTAATTGAGTATCCTATAGCATGGGCGGGGCTTGCCCTGGCACAGAAGGCCAAACACGAGATTTCTGCAGCATTTCAAATTGAGCAGTCTGATCTAATGGAGGCTGAAGAGCGAGCAGTTCATAGTTTAAAGCAGGCAATATCTGAGGATCCCGAAGATGCAGTACAGTGGCACCAACTTGGCCTGCACAGCCTTTGTACTAGGCAGTTCAAATCATCACAAAGGTACCTCAAATCCGCCGTTGCTCGCTTCAAGGATTGCAGTTATGCATGGTCAAATCTTGGTGTTTCACTGCAGCTGTCAGAAGAGCCAGTACATGCTGAAGAAGTATACAAGCGAGCCTTGGAATTGGCCACTGAAAACTGCGCACATGTGATATTTTCGAACCTTGGAAATCTCTACCGGCAACAAAAACAGTATGAGCGTGCCAAAGCCATGTTTTCAAAGTCTCTGGATCTGCAGCCTGGCTATCCACCTGCATTTAACAATCTAGGCCTTGTATTTGTTGCCGAAGGTCAATGGGAAGAAGCTAAATATTGCTTTGACAAAGCCCTGCAAGTTGACCCATTACTTGACGCAGCCAAATCCAATGTGATTAAAGCAGCAGCCATGTCAAAATTTTGTAGCAGCTAG 3573 43.58 MASNEGFLTYEQREKLKIASLNLENLSSSPKSPTSLLPEHFVKAPTGGKAPTAGIAVRHVRRSHSGKFVRVKKDGAGGKGTWGKLLDTDGESRVDRNDPNYDSGEEPYQLVGSTISDPLDEYKKAVVSMIEEYFSNCDVELTASELKELGSSEYHPYFIKRLVSMAMDRHDREKEMASVLLSSLYADVISPAQIRDGFFMLLESADDLAVDILDTVDILGLFLARAVVDDILPPAFLTRAKKALQESSKGFQVIQTAEKSYLSAPHHAELIEKKWGGCTHITVEEVKKKIADLLREYVENGDTFEACRCIRELGVSFFHHEVVKRALILAMEIRTAEPLIMKLLKETAEEGLISSSQMMVKGFSRLAESLDDLALDIPSAKSLFQSLIPRAISEGWLDASFMNCSSEDGGERGKDEKVKRYKQEAVAIIHEYFLSDDIPELIRSLEDFGAPEYNPIFLKKLITLALDRKNREKEMASVLLSALHIEIFSTEDIVNGFTMLLESAEDTALDILDASNELALFLARAVIDDVLAPLNLEEIAIRLPAVCAGNETIRMAQSLIAARHAGERLLRCWGGGTGWAVEDAKDKIQKLLEEYESGGVVGEACQCIRDLGMPFFNHEVVKKALVMAMEKKNDGMLNLLQECFGEGLITINQMTKGFTRIKDGLEDLALDIPNAKEKFGLAHVARKMPKNAHAHFILGLMYQRVGQPQKAVAAYEKAEEILLRSDSEIDRPEFLSMVQIHHAQCLLLETDWDRSDKELEREELEEILNKLKESMQSDVRQAALWNTVGLMHLTTGRLQNAIAVFSSLLSIVPDNYDCLGNLGIAYLQSGNVEQSEKCFQELILKDQNHPAALINYAALLLCKYGANVAGAGANAGEGSSVNQIKGMIVAKECLLTALKADPKAAHLWANLANAYHIIGDHRSSGKCLEKVAKLEPNCMSMRYSIAVHRIKDAERSQDPSEQLAWAGNEMASIIRDGDSSVIEYPIAWAGLALAQKAKHEISAAFQIEQSDLMEAEERAVHSLKQAISEDPEDAVQWHQLGLHSLCTRQFKSSQRYLKSAVARFKDCSYAWSNLGVSLQLSEEPVHAEEVYKRALELATENCAHVIFSNLGNLYRQQKQYERAKAMFSKSLDLQPGYPPAFNNLGLVFVAEGQWEEAKYCFDKALQVDPLLDAAKSNVIKAAAMSKFCSS 1190
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6909215 6918411 - Bma017060.1 Bma03g00758 79431

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00758 1190 SUPERFAMILY TPR-like 689 942 IPR011990 GO:0005515
Bma03g00758 1190 SUPERFAMILY TPR-like 1017 1169 IPR011990 GO:0005515
Bma03g00758 1190 PANTHER PROGRAMMED CELL DEATH 4 1 686 IPR039778 GO:0045892
Bma03g00758 1190 MobiDBLite consensus disorder prediction 80 108 - -
Bma03g00758 1190 ProSiteProfiles TPR repeat profile. 782 815 IPR019734 GO:0005515
Bma03g00758 1190 SUPERFAMILY ARM repeat 119 278 IPR016024 -
Bma03g00758 1190 SMART ma3_7 421 532 IPR003891 -
Bma03g00758 1190 SMART ma3_7 122 233 IPR003891 -
Bma03g00758 1190 SMART ma3_7 286 398 IPR003891 -
Bma03g00758 1190 SMART ma3_7 584 689 IPR003891 -
Bma03g00758 1190 Gene3D - 272 407 - -
Bma03g00758 1190 Gene3D - 571 691 - -
Bma03g00758 1190 Pfam Tetratricopeptide repeat 1140 1169 IPR013105 -
Bma03g00758 1190 Gene3D Tetratricopeptide repeat domain 878 975 IPR011990 GO:0005515
Bma03g00758 1190 SUPERFAMILY ARM repeat 417 576 IPR016024 -
Bma03g00758 1190 ProSiteProfiles TPR repeat profile. 1104 1137 IPR019734 GO:0005515
Bma03g00758 1190 MobiDBLite consensus disorder prediction 86 102 - -
Bma03g00758 1190 Gene3D Tetratricopeptide repeat domain 983 1091 IPR011990 GO:0005515
Bma03g00758 1190 ProSiteProfiles MI domain profile. 121 242 IPR003891 -
Bma03g00758 1190 PANTHER PROGRAMMED CELL DEATH PROTEIN 4-LIKE 1 686 - -
Bma03g00758 1190 ProSiteProfiles MI domain profile. 285 407 IPR003891 -
Bma03g00758 1190 Pfam MA3 domain 286 398 IPR003891 -
Bma03g00758 1190 Pfam MA3 domain 123 233 IPR003891 -
Bma03g00758 1190 Pfam MA3 domain 585 680 IPR003891 -
Bma03g00758 1190 Pfam MA3 domain 422 531 IPR003891 -
Bma03g00758 1190 SUPERFAMILY ARM repeat 580 681 IPR016024 -
Bma03g00758 1190 Pfam Tetratricopeptide repeat 905 938 IPR019734 GO:0005515
Bma03g00758 1190 Pfam Tetratricopeptide repeat 692 721 IPR019734 GO:0005515
Bma03g00758 1190 Pfam Tetratricopeptide repeat 1109 1135 IPR019734 GO:0005515
Bma03g00758 1190 Pfam Tetratricopeptide repeat 796 851 - -
Bma03g00758 1190 ProSiteProfiles MI domain profile. 583 702 IPR003891 -
Bma03g00758 1190 ProSiteProfiles TPR repeat region circular profile. 1138 1169 - -
Bma03g00758 1190 SMART tpr_5 692 725 IPR019734 GO:0005515
Bma03g00758 1190 SMART tpr_5 782 815 IPR019734 GO:0005515
Bma03g00758 1190 SMART tpr_5 905 938 IPR019734 GO:0005515
Bma03g00758 1190 SMART tpr_5 1138 1171 IPR019734 GO:0005515
Bma03g00758 1190 SMART tpr_5 1104 1137 IPR019734 GO:0005515
Bma03g00758 1190 SMART tpr_5 816 849 IPR019734 GO:0005515
Bma03g00758 1190 SMART tpr_5 1068 1101 IPR019734 GO:0005515
Bma03g00758 1190 SMART tpr_5 1034 1067 IPR019734 GO:0005515
Bma03g00758 1190 SUPERFAMILY ARM repeat 282 403 IPR016024 -
Bma03g00758 1190 Gene3D Tetratricopeptide repeat domain 754 864 IPR011990 GO:0005515
Bma03g00758 1190 ProSiteProfiles TPR repeat profile. 1138 1171 IPR019734 GO:0005515
Bma03g00758 1190 Coils Coil 754 781 - -
Bma03g00758 1190 ProSiteProfiles TPR repeat profile. 905 938 IPR019734 GO:0005515
Bma03g00758 1190 Gene3D - 116 262 - -
Bma03g00758 1190 Gene3D - 410 563 - -
Bma03g00758 1190 Gene3D Tetratricopeptide repeat domain 1092 1186 IPR011990 GO:0005515
Bma03g00758 1190 ProSiteProfiles TPR repeat profile. 692 725 IPR019734 GO:0005515
Bma03g00758 1190 ProSiteProfiles MI domain profile. 420 541 IPR003891 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00758 - - - tcc:18605022 1157.51
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00758 Bma-Chr3:6909215 Bma04g00545 Bma-Chr4:4759705 3.42E-08 dispersed
Bma01g01208 Bma-Chr1:13914344 Bma03g00758 Bma-Chr3:6909215 6.15E-06 transposed
Bma03g00758 Bma-Chr3:6909215 Bma06g00241 Bma-Chr6:3184952 5.93E-71 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g884 Blo04g00710 . . . . . . . Cmo13g00806 . . . . . . Cpe20g00336 . . . . . . . . . . . . . . . . . Cone13ag0196 . Lsi02g00462 Csa01g00919 Chy12g01208 Cme12g01629 . . . Bda14g00783 . Bpe15g00663 Bma03g00758 . . . . Cma13g00775 . Car13g00621 . . . Bhi08g01689 . . Lac10g0534 . . . Cla03g00319 . . . Clacu03g0337 Cmu03g0943 . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003831 3 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 3 2 1 45
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma03g00758 Bma_Chr03 FPKM 0.0 29.73085 28.306437 23.317404 34.699654 28.741806 18.310896 36.035458 29.891531 33.988766