Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00759 ATGGGAGTCAAGCTCTCACTCTTTTTCTCTCTCCTCCTCGTCTCTCTCCTTACTCCCCTCGTCTTCTCCTCCCCAGTTAAGGACCCAGAGCTCGTAGTACAGCAAGTACACAGAAGCATCAATGCCTCCAGGCGGCGTCTTGGGTACCTCTCCTGCGGCACCGGAAACCCTATCGACGACTGCTGGCGGTGCGACCCCAACTGGGAGGATAATCGACAGGCCCTAGCCGATTGCGCAATCGGGTTCGGTAAAAACGCCGTCGGAGGCCGCGACGGTTTGATCTACGTAGTTACTGACGATGGCGACGATGATCCAGTGAATCCGAAACCCGGTACGCTCCGATACGCAGTGATTCAAGACGAACCGCTCTGGATAATTTTCGACAGGGACATGAGGATAAAACTGAAAGAAGAACTGATAATGAATTCTTTCAAAACCATCGACGGGAGAGGGGCCGAGGTCCATATTTCTGGGGGACCTTGCATTACGATACAGTACGTGACAAATATTATAATCCACGGTCTCCATATCCACGACTGTAAGCAAGCGGGGAATGCTCACGTGCGGGACTCCCCACATCACTATGGGTGGAGAACTGAATCGGACGGAGATGGGGTTTCAATCTTCGGTGGTAGCCATGTGTGGGTCGATCATTGCTCTTTGTCGAACTGTAACGACGGCCTGATCGATGCGATTCATGGGTCTACGGCTATTACGATTTCAAATAATTATATGACACATCATGATAAGGTAATGTTGTTAGGTCACAGCGATTCATACAGTCAAGACAAGAATATGCAGGTCACCATTGCCTTTAATCACTTTGGAGAAGGCCTAATACAAAGAATGCCCAGGTGTAGGCTTGGGTATTTTCATGTGGTCAACAACGACTACACCCACTGGGAAATGTATGCCATTGGAGGGAGCGCAGCCCCTACGATCAATAGCCAAGGCAACCGATTTCTTGCCCCAGACGACAGATTCAACAAAGAGGTGACGAAGCGTGAGGATGCACCGGAGAGCGAATGGAAGGAATGGCATTGGAGGTCAGAGGGAGACTTGATGTTAAACGGTGCGTTTTTCACAGGCATCTGGGGCCGGAGCTTCTTCAAGCTATGCTAA 1122 50.36 MGVKLSLFFSLLLVSLLTPLVFSSPVKDPELVVQQVHRSINASRRRLGYLSCGTGNPIDDCWRCDPNWEDNRQALADCAIGFGKNAVGGRDGLIYVVTDDGDDDPVNPKPGTLRYAVIQDEPLWIIFDRDMRIKLKEELIMNSFKTIDGRGAEVHISGGPCITIQYVTNIIIHGLHIHDCKQAGNAHVRDSPHHYGWRTESDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYSQDKNMQVTIAFNHFGEGLIQRMPRCRLGYFHVVNNDYTHWEMYAIGGSAAPTINSQGNRFLAPDDRFNKEVTKREDAPESEWKEWHWRSEGDLMLNGAFFTGIWGRSFFKLC 373
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6924428 6925845 + Bma017061.1 Bma03g00759 79432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00759 373 PANTHER PECTATE LYASE 18-RELATED 11 362 IPR045032 GO:0030570
Bma03g00759 373 Pfam Pectate lyase 137 321 IPR002022 -
Bma03g00759 373 PRINTS Pollen allergen Amb family signature 346 370 IPR018082 -
Bma03g00759 373 PRINTS Pollen allergen Amb family signature 282 301 IPR018082 -
Bma03g00759 373 PRINTS Pollen allergen Amb family signature 78 95 IPR018082 -
Bma03g00759 373 PRINTS Pollen allergen Amb family signature 102 127 IPR018082 -
Bma03g00759 373 PRINTS Pollen allergen Amb family signature 138 154 IPR018082 -
Bma03g00759 373 PRINTS Pollen allergen Amb family signature 202 223 IPR018082 -
Bma03g00759 373 PRINTS Pollen allergen Amb family signature 304 323 IPR018082 -
Bma03g00759 373 Gene3D - 55 370 IPR012334 -
Bma03g00759 373 SUPERFAMILY Pectin lyase-like 41 368 IPR011050 -
Bma03g00759 373 PANTHER PECTATE LYASE 11 362 - -
Bma03g00759 373 SMART amb_all 130 327 IPR002022 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma03g00759 Bma06g00238 CCT
Bma03g00759 Bma06g00238 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00759 Bma-Chr3:6924428 Bma11g00322 Bma-Chr11:3033648 0 dispersed
Bma03g00759 Bma-Chr3:6924428 Bma06g00238 Bma-Chr6:3163295 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00759 K01728 - pop:7453817 662.914