Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00766 ATGGCTGCAATTTCATCTGCCACTGCGTCGGCTTCCTCGAAGCTCATTTTTCCCCACCCCTCCTCTTCACAAACTTCCCATGCAACCTCCATCTCTGCCGCTTTCTGCACCAAACCCTCCTCCAAAACCCACCTTACTTCCTCCTTCCTCAATCCCTCCACCATTCTCCACCTTATTCCCTCCTCCAACGCAGCCGCTTCATCCTCCCGCCGCCACCGCTCCTTCACCATCAGAGCCGCCCGCGGCAAATTCGAGCGCAAGAAACCGCATGTAAACATTGGCACAATCGGGCACGTCGACCATGGGAAGACCACTCTTACCGCCGCTCTTACCATGGCTTTAGCCTCTATGGGTAACAGCGCTCCCAAAAAGTACGATGAAATCGACGCTGCCCCTGAGGAGAAAGCTCGGGGTATCACTATCAACACTGCGACCGTCGAGTACGAGACGGAAAGCCGCCATTATGCTCACGTCGATTGCCCTGGCCACGCGGATTACGTCAAAAACATGATTACTGGTGCGGCGCAAATGGACGGCGCAATTCTCGTAGTTTCCGGAGCAGACGGCCCAATGCCCCAAACTAAGGAGCATATTTTGTTGGCTAAGCAAGTGGGTGTGCCTAATATGGTTGTTTTTCTCAACAAGCAAGATCAGGTAGACGATGAGGAGCTTTTGCAGCTCGTTGAATTGGAGGTGCGTGAGTTACTTTCATCCTATGAATTCCCTGGTGATGATGTACCTATTGTTTCTGGTTCTGCTTTATTAGCCCTTGAGGCGTTAATGGCTAATCCCAAAATTAAAAGAGGAGAAAATCAATGGGTAGATAAAATTTATGAACTTATGGATTCTGTAGATAGTTACATACCAATTCCCCAAAGACAAACAGATCTTCCTTTTTTACTTGCTGTTGAAGATGTGTTTTCAATTACTGGTCGTGGAACTGTGGCGACTGGCCGTGTTGAGAGAGGCACGGTCAGAGTTGGTGAAACTGTGGAGATTGTTGGGTTGAAGGATACTAGAAACACCACTGTTACTGGAGTGGAGATGTTTCAAAAGATTCTTGATGAGGCCTTGGCTGGGGATAACGTGGGGATATTGCTGAGAGGTATTCAGAAGACCGATATACAGAGAGGAATGGTTTTGGCTAAGCCTGGCTCCATTACTCCACACACCAAGTTCACTGCAATTGTTTATGTGTTGAAGAAAGAAGAGGGTGGAAGGCATTCGCCCTTTTTCGCAGGGTATAGGCCTCAATTTTACATGAGAACTACTGATGTAACAGGAAAAGTGACCTCCATCATGAATGATAAGGACGAGGAGTCTAAGATGGTTATGCCTGGAGATCGTGTGAAAATGGTTGTCGAACTTATAATGCCAGTTGCTTGCGAGCAGGGAATGAGATTTGCCATCAGAGAAGGCGGGAAGACTGTCGGAGCTGGTGTTATTCAATTGATTGTGGAGTGA 1464 48.02 MAAISSATASASSKLIFPHPSSSQTSHATSISAAFCTKPSSKTHLTSSFLNPSTILHLIPSSNAAASSSRRHRSFTIRAARGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALASMGNSAPKKYDEIDAAPEEKARGITINTATVEYETESRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGDDVPIVSGSALLALEALMANPKIKRGENQWVDKIYELMDSVDSYIPIPQRQTDLPFLLAVEDVFSITGRGTVATGRVERGTVRVGETVEIVGLKDTRNTTVTGVEMFQKILDEALAGDNVGILLRGIQKTDIQRGMVLAKPGSITPHTKFTAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGKVTSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQLIVE 487
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7009485 7010948 + Bma017068.1 Bma03g00766 79439

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00766 487 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 88 292 IPR000795 GO:0003924|GO:0005525
Bma03g00766 487 TIGRFAM small_GTP: small GTP-binding protein domain 91 223 IPR005225 GO:0005525
Bma03g00766 487 CDD EF_Tu 89 291 IPR041709 -
Bma03g00766 487 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 129 144 IPR031157 -
Bma03g00766 487 PRINTS GTP-binding elongation factor signature 136 144 IPR000795 GO:0003924|GO:0005525
Bma03g00766 487 PRINTS GTP-binding elongation factor signature 209 218 IPR000795 GO:0003924|GO:0005525
Bma03g00766 487 PRINTS GTP-binding elongation factor signature 92 105 IPR000795 GO:0003924|GO:0005525
Bma03g00766 487 PRINTS GTP-binding elongation factor signature 156 166 IPR000795 GO:0003924|GO:0005525
Bma03g00766 487 PRINTS GTP-binding elongation factor signature 172 183 IPR000795 GO:0003924|GO:0005525
Bma03g00766 487 Pfam Elongation factor Tu C-terminal domain 386 485 IPR004160 -
Bma03g00766 487 Hamap Elongation factor Tu [tuf]. 79 487 IPR004541 GO:0003746|GO:0005525|GO:0006414
Bma03g00766 487 Gene3D - 80 291 IPR027417 -
Bma03g00766 487 Gene3D Translation factors 294 422 - -
Bma03g00766 487 CDD EFTU_II 299 385 IPR033720 -
Bma03g00766 487 TIGRFAM EF-Tu: translation elongation factor Tu 80 487 IPR004541 GO:0003746|GO:0005525|GO:0006414
Bma03g00766 487 Gene3D Translation factors 426 486 - -
Bma03g00766 487 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 386 483 IPR009001 -
Bma03g00766 487 CDD EFTU_III 388 482 - -
Bma03g00766 487 SUPERFAMILY Translation proteins 293 389 IPR009000 -
Bma03g00766 487 PANTHER ELONGATION FACTOR TU-RELATED 25 487 - -
Bma03g00766 487 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 86 314 IPR027417 -
Bma03g00766 487 PANTHER ELONGATION FACTOR TU 25 487 - -
Bma03g00766 487 Pfam Elongation factor Tu GTP binding domain 88 289 IPR000795 GO:0003924|GO:0005525
Bma03g00766 487 Pfam Elongation factor Tu domain 2 313 381 IPR004161 GO:0005525
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00766 K02358 tuf, TUFM; elongation factor Tu - zju:107418301 803.897
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma03g00766 Bma06g00224 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00766 Bma-Chr3:7009485 Bma06g00224 Bma-Chr6:2652013 0 dispersed
Bma07g01227 Bma-Chr7:47163420 Bma03g00766 Bma-Chr3:7009485 1.92E-06 dispersed
Bma03g00766 Bma-Chr3:7009485 Bma11g00157 Bma-Chr11:1435075 3.02E-43 transposed
Bma03g00766 Bma-Chr3:7009485 Bma08g01145 Bma-Chr8:50514532 3.99E-45 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g834 Blo04g00717 . . . . . Bma06g00224 . . . Cma10g00090 Cma11g00064 Car10g00079 Car11g00058 Sed08g0074 . Cpe04g01586 Bhi02g00598 Tan09g2310 Cmetu02g0003 . . . . Cla06g01704 Cam06g1892 Cec06g1941 Cco06g1945 Clacu06g1848 Cmu06g1789 Cre06g2604 Cone2ag0932 Cone16ag0071 . . . . . . . . . . . Bpe15g00654 Bma03g00766 . . Cmo10g00093 Cmo11g00067 . . . . . Cpe18g00872 . . . . . . . . . . . . . . Lsi06g01592 . . Cme02g02012
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006341 1 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 0 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma03g00766 Bma_Chr03 FPKM 6.465414 4.971038 11.474738 10.864244 4.634033 5.297605 6.787131 7.970626 9.043066 10.124091