Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00799 ATGGCGGCGCATTCTTCGTCTTCTACTTTGCCTGAATCTTCTTCCTCCAGGCACCACGCCTATAGCAGGAAGCAGAAGTCGCTCGGTCTTCTATGCTCAAATTTCCTGAGCTTGTATAATCGCGATGGCATCCACTCGATCGGTCTGGATGATGCTGCATCGCGATTAGGTGTTGAGAGAAGGCGGATCTATGATATTGTAAACGTCCTGGAAAGTGTTTTAGCGAGGAGGGCAAAGAATCAATACAGCTGGAAAGGATTTGAAGCTATTCCTGTCGCCTTACAGCAGCTCAAGGAAGAGGGATTGAAAGAAAATTTCAATGCATCTGATGGTAACGACTATGCAAAAGCATCAGATGATGAGGATGAAGATGAAACATTATCAAATCCTGCAACCGGAAGCCAAAACTCAATTTCTTCGCTGCCCAAACATTATTCGTCTAAATCAGACAACAGAAGGGAGAAGTCTTTGGCCCTTCTTACTCGAAACTTTGTCAAGCTGTTTATCTGCTCTAAAGTGGATCTCATCTCTCTTGATGAAGCTGCAAGGTTATTGCTAGGGGATGGTCACAATTCATCAATTATGAGAACAAAAGTAAGACGGCTCTATGATATTGCAAACGTGCTATCCTCCATGAATCTAATTGAGAAGACCCACGCGTCAGTCACCAGAAAACCTGCATTTAGATGGTTGGGATGGAAGGATAGATCTGGAAAGGAAGCCACTTGTAGTGAACCCCCACCGGAACCTAGGAAAAGGGCATTTGGAATCGATGTAACAAACATCAATTTTAAGAGGAACAAAATTGAAACTTTAGCTAATGAGAACCCGAAGCAGGATATCAATATTACAAAGTCAGCTAAACAAAAAGATTTGATATACGAGGTTGATAAACAAGGTTTGGACAAGGAAAGTAAACAAGGTACAAAGAGCTACCACTTTGGGCCTTTTGCACCAGTAACTGTTGCCTTAGTTGGTCCTCAGAGTAGCAGCAACGTGAAGGATAACCCTGATTGGGAGAGCCTTGCCTCTACTTATCGACCCCAGTATCAGAACCAAGCTTTGAAAGAACTATTCTCTCACTATATGGAAGCATGGAAATCATGGTACTCAGAAGCGGTAAAGAAACCTATAAAGATTTCTTGA 1146 42.67 MAAHSSSSTLPESSSSRHHAYSRKQKSLGLLCSNFLSLYNRDGIHSIGLDDAASRLGVERRRIYDIVNVLESVLARRAKNQYSWKGFEAIPVALQQLKEEGLKENFNASDGNDYAKASDDEDEDETLSNPATGSQNSISSLPKHYSSKSDNRREKSLALLTRNFVKLFICSKVDLISLDEAARLLLGDGHNSSIMRTKVRRLYDIANVLSSMNLIEKTHASVTRKPAFRWLGWKDRSGKEATCSEPPPEPRKRAFGIDVTNINFKRNKIETLANENPKQDINITKSAKQKDLIYEVDKQGLDKESKQGTKSYHFGPFAPVTVALVGPQSSSNVKDNPDWESLASTYRPQYQNQALKELFSHYMEAWKSWYSEAVKKPIKIS 381
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7397064 7399466 - Bma017108.1 Bma03g00799 79472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00799 381 SUPERFAMILY Winged helix DNA-binding domain 22 84 IPR036390 -
Bma03g00799 381 Pfam E2F/DP family winged-helix DNA-binding domain 24 86 IPR003316 GO:0005667|GO:0006355
Bma03g00799 381 Pfam E2F/DP family winged-helix DNA-binding domain 154 232 IPR003316 GO:0005667|GO:0006355
Bma03g00799 381 Gene3D - 146 234 IPR036388 -
Bma03g00799 381 Gene3D - 18 88 IPR036388 -
Bma03g00799 381 MobiDBLite consensus disorder prediction 128 145 - -
Bma03g00799 381 SMART E2F_TDP_2 152 232 IPR003316 GO:0005667|GO:0006355
Bma03g00799 381 SMART E2F_TDP_2 23 86 IPR003316 GO:0005667|GO:0006355
Bma03g00799 381 PANTHER TRANSCRIPTION FACTOR E2F 6 373 IPR015633 GO:0000978|GO:0006357
Bma03g00799 381 MobiDBLite consensus disorder prediction 105 149 - -
Bma03g00799 381 SUPERFAMILY Winged helix DNA-binding domain 154 233 IPR036390 -
Bma03g00799 381 PANTHER E2F TRANSCRIPTION FACTOR-LIKE E2FF 6 373 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma03g00799 Bma06g00196 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00799 Bma-Chr3:7397064 Bma04g00537 Bma-Chr4:4712663 2.48E-06 dispersed
Bma03g00799 Bma-Chr3:7397064 Bma06g00197 Bma-Chr6:2405688 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57025 PF02319 E2F_TDP 1.10E-19 CL0123 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00799 K09391 - csv:101219210 513.842