Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00802 ATGTCTTGCTTCTTCTCCTTCTTCTTCTCTCCTGCAAATGTTGCATCTATAAATCAATCACCCACCATTTTCAGACTTCGAGCTCTCTCTTTTCTCTGTACTGTTTTTGTTTGCCGGAGAAATATGGTGAAGGAAGACTCCCCGCAGTGTTCGGGCCAGCTTCATGTTTTGGCTGTTGACGATAGCCATGTTGATCGGAAGGTTATTGAGAGGCTGCTTAGGATCTCTTCTTGTAAAGTTACGGCAGTAGAAAGTGGTACAAGAGCTCTGCAGTTTCTGGGGTTGGACGGAGCAAAAACATCTGGGATTGATGGTTTGAAAGTGAATCTGATAATGACAGATTACTCAATGCCTGGAATGACAGGATTTGAATTGCTGAAAAGGATCAAGGAATCATCAGATTTTAGAGATGTCCCAGTCGTCGTGATGTCATCGGAGAACATCTTAGCTCATATCCACAGGTGTTTGGAGGAAGGGGCCAAGGAATTTATTGTCAAGCCGGTGAAACTATCGGACGTGAAGCGATTGAAAGATTTCCTGATAACGAAGGGAAAAGGCGAAGAAACTAGAGAGCAGAGTTCGCCAGAGAGGGAGTTTCGAGCCGACGAAATTGGGCTCTCGAATGATCCAATGCCGGCAATGCGGAATTGGGAGATGTTGTGTACTAAACTGCAGAAGAAGCCTAGATTGTGCAAGATGAATTGA 705 44.68 MSCFFSFFFSPANVASINQSPTIFRLRALSFLCTVFVCRRNMVKEDSPQCSGQLHVLAVDDSHVDRKVIERLLRISSCKVTAVESGTRALQFLGLDGAKTSGIDGLKVNLIMTDYSMPGMTGFELLKRIKESSDFRDVPVVVMSSENILAHIHRCLEEGAKEFIVKPVKLSDVKRLKDFLITKGKGEETREQSSPEREFRADEIGLSNDPMPAMRNWEMLCTKLQKKPRLCKMN 234
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7424151 7425314 + Bma017112.1 Bma03g00802 79475

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00802 234 SMART REC_2 54 177 IPR001789 GO:0000160
Bma03g00802 234 Gene3D - 54 229 - -
Bma03g00802 234 PANTHER TWO-COMPONENT RESPONSE REGULATOR 50 206 IPR045279 GO:0009736
Bma03g00802 234 SUPERFAMILY CheY-like 53 181 IPR011006 -
Bma03g00802 234 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR6 50 206 - -
Bma03g00802 234 CDD REC_typeA_ARR 56 176 - -
Bma03g00802 234 ProSiteProfiles Response regulatory domain profile. 55 181 IPR001789 GO:0000160
Bma03g00802 234 Pfam Response regulator receiver domain 56 173 IPR001789 GO:0000160
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00802 K14492 ARR-A; two-component response regulator ARR-A family - zju:107419317 231.106
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma03g00802 Bma06g00194 CCT
Bma03g00802 Bma06g00194 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00802 Bma-Chr3:7424151 Bma14g01751 Bma-Chr14:37731854 1.11E-61 dispersed
Bma03g00802 Bma-Chr3:7424151 Bma06g00194 Bma-Chr6:2365746 1.02E-101 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g678 Blo04g00749 Blo16g00206 . . . Bpe13g00265 Bma06g00194 . . . Cma10g00154 . Car10g00145 . Sed08g0172 . . Bhi02g00384 Tan09g2194 Cmetu02g1807 . Hepe09g0164 . . Cla06g01631 Cam06g1813 Cec06g1863 Cco06g1869 Clacu06g1772 Cmu06g1714 Cre06g2534 . . Cone13ag0113 Cone19ag0116 . . . . . . . Bda14g00828 . Bpe15g00623 Bma03g00802 . . Cmo10g00165 . . . . . . Cpe18g00823 . . . . . . . . . . . . . . Lsi06g01513 Csa01g00186 Chy02g02547 Cme02g01933
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma06g00994 BCT,CCT,ECH 15 276 Response Regulator Gene Family AT4G31920 57.6 5.2e-78 288.9
Bma01g00296 . 5 281 Response Regulator Gene Family AT4G31920 53.8 3.7e-76 282.7
Bma01g00293 . 1 276 Response Regulator Gene Family AT4G31920 53.6 8.3e-76 281.6
Bma01g00295 BCT,CCT,ECH 5 294 Response Regulator Gene Family AT4G31920 50.3 2.9e-73 273.1
Bma04g01144 BCT,CCT,ECH 25 272 Response Regulator Gene Family AT4G31920 61.6 9.5e-72 268.1
Bma04g01144 BCT,CCT,ECH 27 381 Response Regulator Gene Family AT2G25180 50.1 5.2e-76 282.3
Bma07g00742 CCT,ECH 79 275 Response Regulator Gene Family AT2G01760 55.8 2.3e-46 183.0
Bma05g01022 BCT,CCT,ECH 27 271 Response Regulator Gene Family AT5G58080 60.0 8.1e-67 251.9
Bma04g01144 BCT,CCT,ECH 27 322 Response Regulator Gene Family AT5G58080 52.1 1.8e-66 250.8
Bma04g01144 BCT,CCT,ECH 26 251 Response Regulator Gene Family AT4G16110 73.1 5.1e-80 295.8
Bma05g01022 BCT,CCT,ECH 26 251 Response Regulator Gene Family AT4G16110 72.6 1.6e-78 290.8
Bma07g00742 CCT,ECH 8 249 Response Regulator Gene Family AT4G16110 58.6 1.1e-61 235.0
Bma06g01483 CCT,ECH 26 123 Response Regulator Gene Family AT4G16110 82.7 5.2e-40 162.9
Bma14g01751 . 11 160 Response Regulator Gene Family AT3G48100 65.3 1.3e-49 193.0
Bma03g00802 CCT,ECH 54 181 Response Regulator Gene Family AT3G48100 74.6 2.2e-49 192.2
Bma15g00201 BCT 32 159 Response Regulator Gene Family AT3G48100 74.2 1.9e-48 189.1
Bma06g00194 CCT,ECH 24 152 Response Regulator Gene Family AT3G48100 75.6 1.9e-48 189.1
Bma04g01468 BCT 4 150 Response Regulator Gene Family AT3G48100 55.8 2.5e-40 162.2
Bma10g00231 BCT 10 166 Response Regulator Gene Family AT3G48100 52.9 4.2e-40 161.4
Bma14g01751 . 1 163 Response Regulator Gene Family AT1G59940 66.5 9.5e-56 214.2
Bma15g00201 BCT 1 164 Response Regulator Gene Family AT1G59940 65.5 4.0e-54 208.8
Bma03g00802 CCT,ECH 45 180 Response Regulator Gene Family AT1G59940 68.6 1.1e-46 184.1
Bma06g00194 CCT,ECH 1 170 Response Regulator Gene Family AT1G59940 62.2 3.4e-45 179.1
Bma10g00231 BCT 8 147 Response Regulator Gene Family AT1G59940 60.7 2.5e-40 162.9
Bma04g01468 BCT 9 146 Response Regulator Gene Family AT1G59940 60.9 3.3e-40 162.5
Bma14g01751 . 19 193 Response Regulator Gene Family AT1G10470 64.2 4.7e-55 211.5
Bma15g00201 BCT 28 164 Response Regulator Gene Family AT1G10470 73.7 8.3e-52 200.7
Bma03g00802 CCT,ECH 45 180 Response Regulator Gene Family AT1G10470 70.1 4.7e-47 184.9
Bma06g00194 CCT,ECH 15 173 Response Regulator Gene Family AT1G10470 64.4 9.8e-45 177.2
Bma10g00231 BCT 10 182 Response Regulator Gene Family AT1G10470 52.6 8.6e-41 164.1
Bma04g01468 BCT 11 158 Response Regulator Gene Family AT1G10470 58.8 2.5e-40 162.5
Bma14g01751 . 11 160 Response Regulator Gene Family AT3G48100 65.3 1.3e-49 193.0
Bma03g00802 CCT,ECH 54 181 Response Regulator Gene Family AT3G48100 74.6 2.2e-49 192.2
Bma15g00201 BCT 32 159 Response Regulator Gene Family AT3G48100 74.2 1.9e-48 189.1
Bma06g00194 CCT,ECH 24 152 Response Regulator Gene Family AT3G48100 75.6 1.9e-48 189.1
Bma04g01468 BCT 4 150 Response Regulator Gene Family AT3G48100 55.8 2.5e-40 162.2
Bma10g00231 BCT 10 166 Response Regulator Gene Family AT3G48100 52.9 4.2e-40 161.4
Bma03g00802 CCT,ECH 54 181 Response Regulator Gene Family AT5G62920 77.5 1.2e-50 196.4
Bma06g00194 CCT,ECH 16 152 Response Regulator Gene Family AT5G62920 75.4 7.7e-50 193.7
Bma14g01751 . 30 160 Response Regulator Gene Family AT5G62920 71.8 4.2e-48 188.0
Bma15g00201 BCT 32 159 Response Regulator Gene Family AT5G62920 74.2 2.3e-46 182.2
Bma10g00231 BCT 3 161 Response Regulator Gene Family AT5G62920 53.4 3.8e-41 164.9
Bma04g01468 BCT 11 146 Response Regulator Gene Family AT5G62920 59.6 4.2e-40 161.4
Bma03g00802 CCT,ECH 53 188 Response Regulator Gene Family AT1G19050 73.0 1.2e-48 189.9
Bma06g00194 CCT,ECH 5 173 Response Regulator Gene Family AT1G19050 63.2 2.7e-48 188.7
Bma15g00201 BCT 26 189 Response Regulator Gene Family AT1G19050 59.4 1.8e-44 176.0
Bma14g01751 . 31 164 Response Regulator Gene Family AT1G19050 65.2 2.6e-43 172.2
Bma10g00231 BCT 4 152 Response Regulator Gene Family AT1G19050 54.4 6.1e-40 161.0
Bma04g01468 BCT 5 151 Response Regulator Gene Family AT1G19050 55.8 5.2e-39 157.9
Bma10g00231 BCT 6 191 Response Regulator Gene Family AT2G41310 57.5 1.5e-60 229.6
Bma04g01468 BCT 2 199 Response Regulator Gene Family AT2G41310 57.8 7.6e-60 227.3
Bma14g01751 . 33 160 Response Regulator Gene Family AT2G41310 60.0 4.6e-41 164.9
Bma15g00201 BCT 30 170 Response Regulator Gene Family AT2G41310 57.4 3.0e-40 162.2
Bma01g02073 . 32 182 Response Regulator Gene Family AT2G41310 53.3 6.2e-38 154.5
Bma03g00802 CCT,ECH 49 181 Response Regulator Gene Family AT2G41310 55.6 1.4e-37 153.3
Bma10g00231 BCT 1 191 Response Regulator Gene Family AT3G57040 57.7 7.4e-66 247.3
Bma04g01468 BCT 2 199 Response Regulator Gene Family AT3G57040 59.4 1.1e-64 243.4
Bma14g01751 . 31 160 Response Regulator Gene Family AT3G57040 60.4 3.0e-43 172.2
Bma15g00201 BCT 30 161 Response Regulator Gene Family AT3G57040 60.3 5.7e-42 167.9
Bma01g02073 . 32 182 Response Regulator Gene Family AT3G57040 54.6 2.4e-40 162.5
Bma03g00802 CCT,ECH 53 191 Response Regulator Gene Family AT3G57040 56.3 2.0e-39 159.5
Bma03g00802 CCT,ECH 51 202 Response Regulator Gene Family AT1G74890 65.6 1.9e-49 192.6
Bma06g00194 CCT,ECH 21 173 Response Regulator Gene Family AT1G74890 65.8 8.0e-48 187.2
Bma14g01751 . 25 162 Response Regulator Gene Family AT1G74890 66.7 1.7e-45 179.5
Bma15g00201 BCT 23 163 Response Regulator Gene Family AT1G74890 67.4 2.2e-45 179.1
Bma10g00231 BCT 8 147 Response Regulator Gene Family AT1G74890 57.9 1.2e-40 163.3
Bma04g01468 BCT 9 146 Response Regulator Gene Family AT1G74890 58.7 1.6e-40 162.9
Bma14g01751 . 30 157 Response Regulator Gene Family AT2G40670 61.1 1.4e-39 159.5
Bma15g00201 BCT 31 161 Response Regulator Gene Family AT2G40670 61.9 3.2e-39 158.3
Bma04g01468 BCT 7 149 Response Regulator Gene Family AT2G40670 54.9 1.6e-38 156.0
Bma10g00231 BCT 6 149 Response Regulator Gene Family AT2G40670 53.8 3.5e-38 154.8
Bma03g00802 CCT,ECH 53 182 Response Regulator Gene Family AT2G40670 58.8 5.1e-37 151.0
Bma14g01751 . 16 157 Response Regulator Gene Family AT3G56380 57.7 6.4e-42 167.2
Bma15g00201 BCT 22 161 Response Regulator Gene Family AT3G56380 60.3 1.9e-41 165.6
Bma04g01468 BCT 7 149 Response Regulator Gene Family AT3G56380 54.9 2.1e-40 162.2
Bma10g00231 BCT 6 149 Response Regulator Gene Family AT3G56380 53.1 4.6e-40 161.0
Bma03g00802 CCT,ECH 53 182 Response Regulator Gene Family AT3G56380 59.4 1.9e-38 155.6
Bma04g01144 BCT,CCT,ECH 26 251 Response Regulator Gene Family AT4G16110 73.1 5.1e-80 295.8
Bma05g01022 BCT,CCT,ECH 26 251 Response Regulator Gene Family AT4G16110 72.6 1.6e-78 290.8
Bma07g00742 CCT,ECH 8 249 Response Regulator Gene Family AT4G16110 58.6 1.1e-61 235.0
Bma06g01483 CCT,ECH 26 123 Response Regulator Gene Family AT4G16110 82.7 5.2e-40 162.9
Bma06g00994 BCT,CCT,ECH 15 276 Response Regulator Gene Family AT4G31920 57.6 5.2e-78 288.9
Bma01g00296 . 5 281 Response Regulator Gene Family AT4G31920 53.8 3.7e-76 282.7
Bma01g00293 . 1 276 Response Regulator Gene Family AT4G31920 53.6 8.3e-76 281.6
Bma01g00295 BCT,CCT,ECH 5 294 Response Regulator Gene Family AT4G31920 50.3 2.9e-73 273.1
Bma04g01144 BCT,CCT,ECH 25 272 Response Regulator Gene Family AT4G31920 61.6 9.5e-72 268.1
Bma04g01144 BCT,CCT,ECH 27 381 Response Regulator Gene Family AT2G25180 50.1 5.2e-76 282.3
Bma07g00742 CCT,ECH 79 275 Response Regulator Gene Family AT2G01760 55.8 2.3e-46 183.0
Bma05g01022 BCT,CCT,ECH 27 271 Response Regulator Gene Family AT5G58080 60.0 8.1e-67 251.9
Bma04g01144 BCT,CCT,ECH 27 322 Response Regulator Gene Family AT5G58080 52.1 1.8e-66 250.8
Bma03g00101 . 74 303 Response Regulator Gene Family AT5G60100 57.5 8.6e-62 234.6
Bma05g01202 BCT 18 154 Response Regulator Gene Family AT5G60100 61.3 3.6e-44 176.0
Bma10g01320 . 11 152 Response Regulator Gene Family AT5G60100 60.6 2.4e-43 173.3
Bma04g00931 BCT 31 164 Response Regulator Gene Family AT5G60100 59.0 4.9e-41 165.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012253 2 1 2 2 2 0 1 1 0 0 0 0 1 1 1 1 0 2 1 1 0 1 1 1 1 0 1 3 1 1 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57026 PF00072 Response_reg 1.20E-21 CL0304 Bma TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma03g00802 Bma_Chr03 FPKM 16.257605 16.13896 10.336954 11.116734 13.521065 13.683322 14.317919 2.470093 2.590113 2.694649