Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00803 GCACCAAAATCCGGCGGAAAAATGGTTTCTAAGGTCATTTTTGCCATGGCCTTTACCACTCTATTTGTTGTAGTGATCTTCGTCTTGTTCCTCTTAATCTTTGTTCTTCTTCGGCCGAAATCCTGGGCGAATAAGGTTGATACGAGTTTTCAAAGAGAACATGCACCAAATCCTGCAGAACTGAAGAAAGTTGGAGGAAATTTGGGGGAGAGAAGTGTTGTTGAAAACGAGCTGAATTCGATTTGTATAAAAAAAGACGAGGATGAATATTTTACGAGTTTTTCAAAGAATCCTAGCGATGTAGAAGAAGAAGAAGAGAAGGGAGTGAAGAACAGCCCAAAAGAATTGCAAAAGAAACTCAATCCCAAAGAATCTTCAAGGCTATCCAATGAAACAGATCCTATCTCAGTTATTGAAGATCCTACTCCACCAATGGTTTTGGAAAAGAAAACTCAATCACAAATTACTGACCCACTACCAATTCAGATTGAGAAGATTCCACCGCCGCCACCTCTGACGCTTTTCAGATCAAAAAGAAGTCTTGTGAAGCCATCTCCGGATCCTAAGAAGGCCACTTCAGGCTCGGCAGTGAAAACGGGGTTGGGGTTGGAGCTGAGAGCGAAAGTAAACAACAAGAACAAGGCAGGTGGGCTGGACGGGGAAAAGGTGAAGCTGAAGCCGTTGCACTGGGATAAACTCACTTTGGCAATGGCTGATCATTCAGTAGTGTGGGATGAGATCCATGAAGATGGATCTTTGAGGTTTGATGATGATGAAATGGAGAATCTCTTTGGATACAATCTCCAATTTCCTGGAAAGAACAATCTCTTATCAAGTTCAGTCAATTCCAATACTGGCCTGAAATGTCGAGTTTTTCTGCTGGAACCTCGGAAGTCTCAAAATGTGGCGATAGTGTTGAGATCTCTTGCCGTTTCTCGCAAAGAAATTCTCGATGCCATCGTCAATGGCCACGGACTTGATTCAGATACCTTGGAGAAACTTACCAGAGTTTCTCCAACCAAAGAAGAAGAAATCAAGATCCTGCAATTTAACGACAACCCAAATAAACTTGCAGATGCTGAATCTTTTCTCTATCAGATTCTTAGAGCCATTCCTGCTGCATTTTCCTGTTTTAAGGCGATGCTTTTCCGAGCAAATTACGATGTCGAGATTCTTCTTCTAAAAGAGTCTTTGGAGACAGTTGAATCGGGATGTAAGGAGCTCAGAGCCTGCAAGCTCTTTGTTAAGCTTCTCGAAGCTGTTCTCCGGGCTGGTAATCGAATGAATGCCGGGACTGCTAAAGGCAATGCTCAGGGATTCAATCTCAGTGCTCTTCAGAAGCTTTCAGATGTGAAAAGCAATGATGGAAAGACCACTCTTCTTCACTTTGTCGTTGAACAAGTAGCTCGATCTGAGGGAAGACGATGCCAGAAAAACCTTAACCGTAACCTCAGCTATCAAAGAACTCGAACTGGAGAACCCGAATCAGAAAATCCTCTACCAGAAGAGATTAACAAAGAATATCTAGATCTAGGATTACAAATCTTGAGAGAGCTAGGAACGGAACTAACTCACGTGAAGAAAGCAGCTACCCTCGACTACAATAGTTTCATTAATTTGAGCTCCAATATCGAAGCTCGAGCCTCGGAAACCAGTGGACTCGTCAAGCAATGTGGCGATGGTGAGAGAAGTGGATTTGTGAGGGAAATGAAAGGGTTTTTAGAGGAATGTCAAGAAGAACTAAAGGCCGTGAGTGAAGAGCAGAGTAGGGTTATGGAATTAGTCAATAGAACATCAGAATATTTCCAAACAGGGGCTTCACAGGATAAGAGAGCTCACCCGTTTCAGCTTTTCTGCATTGTGAGAGACTTTCTCGAACTAGTTGATCAAGCCTGCATATACATTGATCGGAAACAGCGAAATCCAAGTCCGAGAGTGATTGATATCGACTCATCGCCTCCACTCTCACCTTTGAAAAGAGCAGCAGTGAGATTCCCAGACTTTTATATACATCTAAAGTCAGACATGTCAAGTACATCAAGTGATACCGATGGTGATTTCTGA 2064 42.73 APKSGGKMVSKVIFAMAFTTLFVVVIFVLFLLIFVLLRPKSWANKVDTSFQREHAPNPAELKKVGGNLGERSVVENELNSICIKKDEDEYFTSFSKNPSDVEEEEEKGVKNSPKELQKKLNPKESSRLSNETDPISVIEDPTPPMVLEKKTQSQITDPLPIQIEKIPPPPPLTLFRSKRSLVKPSPDPKKATSGSAVKTGLGLELRAKVNNKNKAGGLDGEKVKLKPLHWDKLTLAMADHSVVWDEIHEDGSLRFDDDEMENLFGYNLQFPGKNNLLSSSVNSNTGLKCRVFLLEPRKSQNVAIVLRSLAVSRKEILDAIVNGHGLDSDTLEKLTRVSPTKEEEIKILQFNDNPNKLADAESFLYQILRAIPAAFSCFKAMLFRANYDVEILLLKESLETVESGCKELRACKLFVKLLEAVLRAGNRMNAGTAKGNAQGFNLSALQKLSDVKSNDGKTTLLHFVVEQVARSEGRRCQKNLNRNLSYQRTRTGEPESENPLPEEINKEYLDLGLQILRELGTELTHVKKAATLDYNSFINLSSNIEARASETSGLVKQCGDGERSGFVREMKGFLEECQEELKAVSEEQSRVMELVNRTSEYFQTGASQDKRAHPFQLFCIVRDFLELVDQACIYIDRKQRNPSPRVIDIDSSPPLSPLKRAAVRFPDFYIHLKSDMSSTSSDTDGDF 687
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7425789 7427937 + Bma017113.1 Bma03g00803 79476

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00803 687 Pfam Formin Homology 2 Domain 221 628 IPR015425 -
Bma03g00803 687 MobiDBLite consensus disorder prediction 483 502 - -
Bma03g00803 687 Gene3D Formin, FH2 domain 239 644 IPR042201 -
Bma03g00803 687 PANTHER FORMIN-RELATED 7 682 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Bma03g00803 687 Coils Coil 567 594 - -
Bma03g00803 687 MobiDBLite consensus disorder prediction 94 126 - -
Bma03g00803 687 MobiDBLite consensus disorder prediction 94 142 - -
Bma03g00803 687 SMART it6_source 215 643 IPR015425 -
Bma03g00803 687 SUPERFAMILY Formin homology 2 domain (FH2 domain) 228 633 - -
Bma03g00803 687 ProSiteProfiles Formin homology-2 (FH2) domain profile. 215 654 IPR015425 -
Bma03g00803 687 PANTHER FORMIN-LIKE PROTEIN 7 682 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00803 - - - qsu:111999311 561.222
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00803 Bma-Chr3:7425789 Bma15g00202 Bma-Chr15:2073879 8.98E-139 dispersed
Bma06g00166 Bma-Chr6:2113391 Bma03g00803 Bma-Chr3:7425789 1.55E-30 dispersed
Bma03g00803 Bma-Chr3:7425789 Bma14g01752 Bma-Chr14:37740998 3.31E-140 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g677 Blo04g00750 . Bda06g00573 . . . . . . . Cma10g00155 . Car10g00146 Car11g00117 Sed08g1374 . . Bhi02g00383 Tan09g2193 Cmetu04g3167 . Hepe09g0163 . . . . . . . . . . . . . . . . . . Blo15g00283 . Bda14g00829 Bpe07g00815 Bpe15g00622 Bma03g00803 . . Cmo10g00166 Cmo11g00124 . . . . . Cpe18g00822 . . . . . . . . . . . . . . . Csa01g00187 Chy02g02546 Cme02g01930
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0019307 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma03g00803 Bma_Chr03 FPKM 24.461714 28.072432 17.227345 16.235741 76.134918 71.908264 79.001953 19.062923 18.534416 17.82383