Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00809 ATGGGAGTGGATTATTACAACATGCTGAAAGTGAACAGAAACGCGAGCGAGGAAGATTTGAAGAAGTCTTATAAGAGATTGGCCATGATATGGCATCCAGACAAGAATCCAGTTAACAAGAGAGAAGCAGAAGCGAAATTCAAGCAAATTTCTGAAGCTTACGATGTTCTTAGCGATCCTCAGAAGCGCCAGATCTACGATCTTTACGGCGAAGAAGCCCTGAAGTCCGGGCAATTCCCTTCGCCTTCTCAGCCGCAACCGTCGATGTCCTCGATGCGCGGCCATAGCCAGCACTACCACCGTCAGCAACCCAACACGACCTCGTATCGTTTTAATCCGAGGGATGCGGATGACATATACGCGGAGTGTTTCGGGCAGGAGAGCGGCGCCGGGAGTGGTGGTGGCGGTGGAGGGAGAAATAAGGGGTTTTTTAGGACTCCGAGTGGGGCAGAGTATGGAGTTGGTTCTCAGACGAAGAAGGCCGCTGCAATTGAGAATGTGTTGCCGTGTAGTTTGGATGAGCTCTTCAAAGGAGCAAAGAAGAAGATGAGGATTTCGAGGAATGTTTATGATGCTTCTGGTAACTTTAGAACTTTGGAAGAGATATTGACAATCGAGATAAAGCCGGGCTGGAAAAAGGGAACGAAGATCACTTTTCCAGAGAAGGGAAACCAAGAGCCAGGTGTCATTCCGGCAGATCTTGTTTTTGTGATTGATGAGAAACCACATTCTGTCTTCAAGAGGGATGGTAATGATCTGGTGATCAATCAAGAACTAACGCTACTCGAGGCGCTCACAGGTAAGACCCTTGATCTCACCACCCTTGATGGAAGAAGTCTTATGATTCCTCTGACAGATATAATAAAACATGGGACAGAGGTGGTTGTCCCCAACGAAGGGATGCCGAACTCAAAAGAACAGACGAGAAAGGGGAATTTGAGGATAAATTTTGATGTTAGATACCCAACGATGCTTTCTTCAGAACAGAAGTCTGATCTGAAAAGAGTTTTGGGTGGAGTTTCATATTGA 1029 46.65 MGVDYYNMLKVNRNASEEDLKKSYKRLAMIWHPDKNPVNKREAEAKFKQISEAYDVLSDPQKRQIYDLYGEEALKSGQFPSPSQPQPSMSSMRGHSQHYHRQQPNTTSYRFNPRDADDIYAECFGQESGAGSGGGGGGRNKGFFRTPSGAEYGVGSQTKKAAAIENVLPCSLDELFKGAKKKMRISRNVYDASGNFRTLEEILTIEIKPGWKKGTKITFPEKGNQEPGVIPADLVFVIDEKPHSVFKRDGNDLVINQELTLLEALTGKTLDLTTLDGRSLMIPLTDIIKHGTEVVVPNEGMPNSKEQTRKGNLRINFDVRYPTMLSSEQKSDLKRVLGGVSY 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7524579 7526045 + Bma017123.2 Bma03g00809 79482

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00809 342 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
Bma03g00809 342 CDD DnaJ 4 59 IPR001623 -
Bma03g00809 342 SUPERFAMILY Chaperone J-domain 3 91 IPR036869 -
Bma03g00809 342 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 2 340 - -
Bma03g00809 342 Pfam DnaJ C terminal domain 166 322 IPR002939 -
Bma03g00809 342 Gene3D - 162 241 - -
Bma03g00809 342 PRINTS DnaJ domain signature 24 39 IPR001623 -
Bma03g00809 342 PRINTS DnaJ domain signature 42 62 IPR001623 -
Bma03g00809 342 PRINTS DnaJ domain signature 62 81 IPR001623 -
Bma03g00809 342 PRINTS DnaJ domain signature 6 24 IPR001623 -
Bma03g00809 342 ProSiteProfiles dnaJ domain profile. 4 70 IPR001623 -
Bma03g00809 342 Gene3D DnaJ domain 3 134 IPR036869 -
Bma03g00809 342 PANTHER BNAA06G20720D PROTEIN 2 340 - -
Bma03g00809 342 MobiDBLite consensus disorder prediction 77 112 - -
Bma03g00809 342 CDD DnaJ_C 164 325 - -
Bma03g00809 342 MobiDBLite consensus disorder prediction 75 112 - -
Bma03g00809 342 SUPERFAMILY HSP40/DnaJ peptide-binding domain 245 331 IPR008971 GO:0006457|GO:0051082
Bma03g00809 342 Pfam DnaJ domain 4 67 IPR001623 -
Bma03g00809 342 Gene3D - 243 323 - -
Bma03g00809 342 SMART dnaj_3 3 62 IPR001623 -
Bma03g00809 342 SUPERFAMILY HSP40/DnaJ peptide-binding domain 167 243 IPR008971 GO:0006457|GO:0051082
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00809 K09510 DNAJB4; DnaJ homolog subfamily B member 4 - qsu:112017642 492.656
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma03g00809 Bma06g00188 CCT
Bma03g00809 Bma06g00188 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00809 Bma-Chr3:7524579 Bma04g01321 Bma-Chr4:44928196 4.53E-136 dispersed
Bma05g00764 Bma-Chr5:44344739 Bma03g00809 Bma-Chr3:7524579 3.66E-12 transposed
Bma03g00809 Bma-Chr3:7524579 Bma06g00188 Bma-Chr6:2331353 1.79E-19 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g489 Blo04g00756 Blo16g00200 . . . Bpe13g00271 Bma06g00188 . Cmo13g00951 Cmo18g00102 . . . . . Cpe20g00207 . . . . . . . . . . . . . . . Cone2ag0864 Cone16ag0143 . . . Csa01g00799 Chy12g01317 Cme12g01743 . . Bda11g01684 Bda14g00836 . Bpe15g00616 Bma03g00809 . Sed08g2567 . . . Cma18g00131 Car13g00762 Car18g00123 Cpe09g01061 . Bhi08g01425 Tan05g2072 Cmetu12g0983 Lac10g0382 Hepe07g2276 . . Cla01g01417 Cam01g1483 Cec01g1522 Cco01g1569 Clacu01g1507 Cmu01g1399 Cre01g1319 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006344 2 2 2 2 2 1 2 1 1 1 1 1 0 1 1 2 1 2 2 1 1 1 1 1 1 0 1 3 1 0 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma03g00809 Bma_Chr03 FPKM 10.567241 14.269332 13.01437 13.244373 9.093829 9.389091 9.453026 26.975344 26.677048 25.101187