Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00819 ATGAATTTACAGAGTGGTTTTCCTCTGCTGCTTCAGCAATTCAATGCGCTTTTCAGGAAAAACTTTTTGCTCGCATGGAGAAACAAAAGAGCGACCTTTCTGCAACTCTTCTCGTCCTTCTTTTTCATCTTTCTCATTTTCTGCATTCAGAAGGCGATTGAGGCTCGATTCAGTACCTCCACCGCCTACGAAACCGTTCGCGATCCAGAACCCTTGGTCAATCCGCCGATTCCGCCATGTGAGGAGAAGTTCTACACTAAGCTTCCTTGCTATGATTTTGTTTATAGCCACGGTGGTAGCTCCAGGATTGGCAGTATAGTCGACGCTATCAGGATGAACAATCCCGGAAGAAATATTCCCTCCAATAAGGTTATGAGTTTTGCTACTACTGCTGAAGTAGATAAATGGCTTTTTACGCACCCTATGCAATGCCCTGGGGCTCTTCATTTTTCCGAAATAAATACTAGTGTCATTAGTTACGGTGTTCAGACTAATTCAACTCCTGCCAATAAGCGAGGGCATTTTGAAGACCCCACATTTAAATTTCAAATTCCACTGCAGCTCGCTGCAGAGAGAGAAATTGCTCGATCTCTGATTGGGATTTCAAATTTTAGCTGGTCTGTTGGTCTCAAGGAGTTTGCACACCCTCCTGTTGATGTTTTCTCTGCAGTGAGTACAGTGGGACCAACGTTTTTCCTCGCAATCGCCATGTTTGGCTTTGTTCTTCAAATCAGTTCGTTAATTACAGAAAAGGAGCTTAAACTTCGTCAGGCGATGACTATGATGGGTTTATACGACACTGCATACTGGCTTTCGTGGCTGACATGGGAGGGAATTATTACACTTATTTCAGCATTATTCACAGTTCTTTTTGGAATGATGTTTCGTTTTGATTTCTTCTTGAAAAACGATTTTGCAATTGTGTTCCTTATGTTCTTTCTCTTTCAGCTTAATATGATTGGATTTGCCTTCATGTTATCAAGCTTTATCAGCAAGTCATCTTCCTCCACTACTGTCGGTTTCTCCATATTCATTGTCGGCTTTCTCACTCAGCTCGTTACGATATTTGGATTCCCCTATTCGAATAACTTTGGAAGAGTTTACAGAATTATCTGGTCATTGTTCCCTCCTAATCTTCTTGCTCAAGCACTAAACCTGCTATCTGATGCTACTTCGACGCCTGGAGATCCTGGGATCAACTGGAGTAGCCGCGCTGATTGTGCACCAAATGATGATGAGTGTGTCATCACAATGAATGACATCTACATTTGGCTCTTGGTTACGTTTCTGGTTTGGTTCGTTTTGGCTATCTACTTCGACAACATTATCCCAAATGCAGCTGGTGTGAGAAAATCATGCTTCTATTTCTTAAGGCCGGGATATTGGACAGGGAGAGGTGGCGGCAAAGTGGAAGAGGGTGGCGTTTGCAGTTGTAGCGGATCTGTTCCGAGGCAGGAGCCTATCACTCCAGACGATGAAGATGTTCTTGAAGAGGAAAACATTGTAAGAAAACAATTCATGGAAAGAACAGTCGATCCAAATGTTGCCGTTCAAATATGTGGCCTTGCTAAGACATACCCCGGGACGAGGAAGGCTGGTTTCTGCTGCTGTTGCAATTGCAAAAGAACTCCAGCTTACCATGCTGTCAGGGGTTTATGGGTGAATTTTGCGAAGGATCAGTTGTTTTGCCTTCTCGGGCCAAATGGAGCAGGGAAAACCACTGCCATCAATTGTCTGACCGGCATCACTCCGGTGACTGGGGGAGATGCTTTGATTTATGGATACTCTGTGCGGAGCTCTGTCGGGATGTCAAATATTCGAAGAATTATAGGTGTTTGTCCACAGTTCGACATTCTCTGGGATGTGTTGTCGGGGCAAGAGCATCTCCACCTTTTTGCTAGTATCAAAGGTCTCCCTCCATCGACTATAAAATCGGTTGCGGAGAAATCACTGTCTGAGGTTAAACTCACCCAAGCGGCCAAGATGAGAGCTGGAAGCTACAGTGGAGGCATGAAACGCCGACTTAGCGTTGCAATAGCCCTTATTGGAGATCCAAAGTTAGTTATTCTAGACGAGCCGACGACAGGAATGGATCCGATCACTAGGAGGCACGTATGGGACATTATAGAGGCCGCGAAGAAAGGCCGTGCTATCATTTTGACGACACACTCAATGGAAGAAGCCGATATTTTGAGTGACCGCATAGGAATCATGGCCAAAGGGAGGCTTCGATGTATTGGAACTTCGATCAGGCTGAAGTCGAGGTTCGGTACTGGCTTCATCGCAAATATTAGCTTTGTTTCGGTTAATGGCGGACAAACTCCAAACAAGGGCCCGATTTCTTTGCATGATCACGATGGAGTGAAACAATTCTTTAAATCTGTAAGTTCATGGGAAAACCGATACAAATTTTTCTCCAAAATGACTCTGTATCTGGTCTTGAAATATTTTTTTTTACAGCGTTTGGATGTGGTGCCGAAAGTGGAGAACAAATCATTCTTGACTTACGTCATTCCTCACGATCGAGAGCAGCTTCTAACGAAATTTTTTGAGGAACTTGAGGAGAGAGCAAATGAATTTGGCATAGCTGACATTCAACTTGGTCTCACCACTCTTGAAGAAGTTTTCTTGAACATTGCAAAACAAGCAGAGCTTGAAATTGCTGCAGCAACAGGGACCATGGTGACTCTAAGCTTAACAACATCCGGGGCATCTGTCCAGGCACGTATACCTGTCGGGTCTAGATTTGTGGGGATTCCAGGAACAGAGACTTCAGAGAATCCACGAGGGATAATGGTGGAAGTTTATTGGGAGCAAGATGACTCTGGCGCACTTTGCATTTCTGGTCACTCCAATGAAGTTCCAGTCCAGCCTACTTTTCAGCCCAATGCTTCTCTGACTGCTGCTTCTTTCAGATCATCTTCCCGGAGAAACATCTTTGGTTTCGGCCGAGCTGGAGAGCCCATTCATGGAATCATTTTCAACCCAGAACACATCGATGCATCTCGTTTTCGGTGA 3018 44.53 MNLQSGFPLLLQQFNALFRKNFLLAWRNKRATFLQLFSSFFFIFLIFCIQKAIEARFSTSTAYETVRDPEPLVNPPIPPCEEKFYTKLPCYDFVYSHGGSSRIGSIVDAIRMNNPGRNIPSNKVMSFATTAEVDKWLFTHPMQCPGALHFSEINTSVISYGVQTNSTPANKRGHFEDPTFKFQIPLQLAAEREIARSLIGISNFSWSVGLKEFAHPPVDVFSAVSTVGPTFFLAIAMFGFVLQISSLITEKELKLRQAMTMMGLYDTAYWLSWLTWEGIITLISALFTVLFGMMFRFDFFLKNDFAIVFLMFFLFQLNMIGFAFMLSSFISKSSSSTTVGFSIFIVGFLTQLVTIFGFPYSNNFGRVYRIIWSLFPPNLLAQALNLLSDATSTPGDPGINWSSRADCAPNDDECVITMNDIYIWLLVTFLVWFVLAIYFDNIIPNAAGVRKSCFYFLRPGYWTGRGGGKVEEGGVCSCSGSVPRQEPITPDDEDVLEEENIVRKQFMERTVDPNVAVQICGLAKTYPGTRKAGFCCCCNCKRTPAYHAVRGLWVNFAKDQLFCLLGPNGAGKTTAINCLTGITPVTGGDALIYGYSVRSSVGMSNIRRIIGVCPQFDILWDVLSGQEHLHLFASIKGLPPSTIKSVAEKSLSEVKLTQAAKMRAGSYSGGMKRRLSVAIALIGDPKLVILDEPTTGMDPITRRHVWDIIEAAKKGRAIILTTHSMEEADILSDRIGIMAKGRLRCIGTSIRLKSRFGTGFIANISFVSVNGGQTPNKGPISLHDHDGVKQFFKSVSSWENRYKFFSKMTLYLVLKYFFLQRLDVVPKVENKSFLTYVIPHDREQLLTKFFEELEERANEFGIADIQLGLTTLEEVFLNIAKQAELEIAAATGTMVTLSLTTSGASVQARIPVGSRFVGIPGTETSENPRGIMVEVYWEQDDSGALCISGHSNEVPVQPTFQPNASLTAASFRSSSRRNIFGFGRAGEPIHGIIFNPEHIDASRFR 1005
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7594471 7598906 - Bma017133.1 Bma03g00819 79492

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00819 1005 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 543 747 IPR027417 -
Bma03g00819 1005 SMART AAA_5 558 742 IPR003593 -
Bma03g00819 1005 Pfam ABC transporter 554 694 IPR003439 GO:0005524
Bma03g00819 1005 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 7 963 IPR026082 GO:0016021|GO:0055085|GO:0140359
Bma03g00819 1005 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 517 765 IPR003439 GO:0005524
Bma03g00819 1005 PANTHER ABC TRANSPORTER A FAMILY MEMBER 1-RELATED 7 963 - -
Bma03g00819 1005 Gene3D - 539 764 IPR027417 -
Bma03g00819 1005 CDD ABC_subfamily_A 517 753 - -
Bma03g00819 1005 ProSitePatterns ABC transporters family signature. 667 681 IPR017871 GO:0005524
Bma03g00819 1005 Pfam ABC-2 family transporter protein 221 438 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00819 - - - mcha:111007040 1502.26
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma03g00819 Bma06g00182 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00819 Bma-Chr3:7594471 Bma06g00183 Bma-Chr6:2258246 0 dispersed
Bma03g00819 Bma-Chr3:7594471 Bma03g00820 Bma-Chr3:7608369 4.98E-79 tandem
Bma04g00480 Bma-Chr4:4190161 Bma03g00819 Bma-Chr3:7594471 5.68E-54 transposed
Bma03g00819 Bma-Chr3:7594471 Bma06g00181 Bma-Chr6:2242887 2.33E-09 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g522 Blo04g00762 Blo16g00192 . . . Bpe13g00281 Bma06g00182 . . . . Cma11g00159 . . Sed14g0146 . Cpe04g01511 Bhi02g00339 Tan09g2144 Cmetu08g1425 . Hepe09g0133 . . Cla06g01603 Cam06g1777 Cec06g1828 Cco06g1836 Clacu06g1739 Cmu06g1684 Cre06g2500 . . Cone13ag0083 . Lsi02g00306 . Chy12g01330 . . . Bda11g01692 Bda14g00842 . Bpe15g00611 Bma03g00819 . . . Cmo11g00151 . . . . . . Bhi08g01403 . . . Hepe07g2288 . . . . . . . . . Lsi06g01481 Csa01g00220 Chy02g02513 Cme02g01899
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004576 2 1 3 2 2 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 8 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma03g00819 Bma_Chr03 FPKM 76.675003 82.183487 28.352098 32.233238 7.999254 8.712128 7.696905 23.761379 23.173998 22.847933