Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00824 ATGGCAGAGGAAAACAGAGTGATGTTTTATGGAATGTGGGCTAGTCCTTACGTAAAGATGGTGGAAATAGCATTGAAAGTTAAAGGCGTGGCCTTTGAGTACGTTGAAGAAGATTTGAGGAACAAAAGTGAATCGCTTCTCAAATACAACCCTGTTCATAAGAAAGTTCCTGTTCTTGTTCACAATGGAAAACCCATCGTAGAATCGCTTGTCATTCTTGAATACATTGATGAAACTTGGAAGAATAGTGGTCCTTCCCTACTGCCTCAAGATCCCTACCAAAGAGCTCAAGTTCGATTCTGGGTTGCCTTTCTACAGCAACAGGTGATTGATAAAGTGGTAGCAGCATTTAGGGGAGAAGGAGGAGAAGCACAAGAAGAAGGCTTAAAGGAAGTGAGGAAGAAACTAAAAGTTTTCGAAGGGGGATTGAAGGATTTACTTCCGAACCGCACTCCGTTCGTAAATGGACACCAACTGGGGATTTTGGAGATTATAATGGTCTCAGCATTCGGACCTTACAAGGCTCACGAACAAGCCCTTGGAATTAAGGTGATAGACCAAGATAATACTCCATTCGTTTTCGCTTGGTTGCAAGATCTAATCGACCTCCCGATCGTGAAACAACTTGCCCTTCCTCACGATAAAATGGTGGACTTTCTTCAGTTATTTAGGCAACTCGCCTGA 684 42.84 MAEENRVMFYGMWASPYVKMVEIALKVKGVAFEYVEEDLRNKSESLLKYNPVHKKVPVLVHNGKPIVESLVILEYIDETWKNSGPSLLPQDPYQRAQVRFWVAFLQQQVIDKVVAAFRGEGGEAQEEGLKEVRKKLKVFEGGLKDLLPNRTPFVNGHQLGILEIIMVSAFGPYKAHEQALGIKVIDQDNTPFVFAWLQDLIDLPIVKQLALPHDKMVDFLQLFRQLA 227
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7654811 7655637 + Bma017138.1 Bma03g00824 79497

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00824 227 Gene3D - 88 227 - -
Bma03g00824 227 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 1 223 IPR045073 -
Bma03g00824 227 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 5 84 IPR004045 -
Bma03g00824 227 CDD GST_C_Tau 92 223 IPR045074 GO:0004364|GO:0006749
Bma03g00824 227 Gene3D Glutaredoxin 1 87 - -
Bma03g00824 227 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 91 226 IPR010987 -
Bma03g00824 227 PANTHER GLUTATHIONE S-TRANSFERASE 1 223 - -
Bma03g00824 227 SUPERFAMILY Thioredoxin-like 6 107 IPR036249 -
Bma03g00824 227 SUPERFAMILY GST C-terminal domain-like 78 225 IPR036282 -
Bma03g00824 227 SFLD Glutathione Transferase (cytosolic) 4 225 IPR040079 -
Bma03g00824 227 CDD GST_N_Tau 7 80 - -
Bma03g00824 227 Pfam Glutathione S-transferase, N-terminal domain 9 78 IPR004045 -
Bma03g00824 227 SFLD Main.3: Omega- and Tau-like 4 225 IPR045073 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00824 K00799 GST, gst; glutathione S-transferase [EC:2.5.1.18] - vvi:100260496 288.885
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00824 Bma-Chr3:7654811 Bma08g00281 Bma-Chr8:3817640 2.82E-109 dispersed
Bma14g01643 Bma-Chr14:34753479 Bma03g00824 Bma-Chr3:7654811 1.06E-53 wgd
Bma03g00824 Bma-Chr3:7654811 Bma06g00175 Bma-Chr6:2208313 9.15E-84 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g547 . . . . . . . . Cmo13g01183 . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa01g00544 Chy12g01545 . . . . Bda14g00849 . . Bma03g00824 . Sed08g2065 . . Cma13g01129 . . . . . Bhi08g01175 Tan05g2447 Cmetu10g1222 Lac10g0073 Hepe07g2513 . . Cla04g01202 Cam04g1264 Cec01g1774 Cco01g1822 Clacu04g1293 Cmu04g1269 Cre01g1562 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001282 1 2 2 3 1 3 0 4 4 3 1 4 2 5 2 1 4 1 1 2 3 3 1 6 4 1 2 3 2 4 75
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma03g00824 Bma_Chr03 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0