Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00827 ATGAGCAGTGTAGACAATTTCATTTTAGCTTTGCTGAGCAAGTGCAAGAGCCTTGTAACTTTGAGGCAAATCCACGCCCTTGTAATGAAAACTGGTTTAGATTCCGACTCTGTAGTAGCCGGAAAACTCCTCATCCACTGCGCCGTCACCGTTTCTGACGCACTCGAATATGGTCGCCGACTCTTTCTCCACTTTCCTTACCCGGACGTTTTTATGTACAATACTTTGATTCGAGGTTTCTCAGAATCTGATTCTCCTCGTAATGCGTTCAGTTTGTTTGTTGAAATGCGTCGCGAGTCCATGGCTCCCCCAGATAGTTTCTCTTTTGCGTTTTTATTTAAAGCGGCTGCGAATTTCAAGGCTTTGAGAATTGGGTTGCAGCTCCATCGTCAAGCCGTTGGTTATGGAATGGATAATCATCTTTTCGTTTCAACCACTCTGATTAGTATGTATGCGGATTGTGGTTGTGTGGGGTCTGCGAAGAAGGTTTTTGAGGAAATTTTAGACCCAAATGTCGTTGCTTGGAACGCCGTTGTTACTGCTTGTTTTAGGTGTGAAGATTTGAAGGGTGCACAGAAGATGTTTGATCAAATTCCTGTCAGAAATTTAACATCGTGGAATATCATGCTTTCTGGGTATACAAAAGCAGGTAAGCTTGAGCTTGCGAGGAAGGCATTTTTCAATATGCCACTGAAAGATGATGTCTCTTGGAGTACTATGATTGTCGGGTTTGCTCATAACGGTTTGTTTGACGATGCTTTCGAATTTTTCAGGGAGTTGCAGGATTTAGGGACTGGGGTAAATGAGGTTAGCCTGACCGGAGTCCTCTCTGCATGTGCGATGGCCGGAGCATTTGAGTTTGGAAAACTTTTACACGGTTTTGTAGAAAAAATCGGATATTTGCATATCACTTCAGTGAACAATGCACTCATCGATGCTTACTCTAAATGCGGGAATGTAGCCATGGCTCAGTTAGTCTTCGTAAGAATGCCAGGAAAGAAGAGTATTGTAACTTGGACAGCCATGATAGCTGGTCTTGCAATGCAAGGTCATGGAAAAGAAGCTATCGAGTTATTTCATGAAATGCAAGAAAATGGCATTAGACCTGATGGGATCGCCTTCATTTCAATCTTGTATGCTTGTAGCCATGCGGGATTAATCGAGGATGGGTGGAAGTATTTTTCTTGCATGAAATGTGTATATGGGATAGAACCGTCCATAGAGCATTATGGTTGCATGGTTGATCTATGTGGACGGGCCGGTCAGCTACAAAAAGCATTTGAATTTGTCTGTCAAATGCCGATTTCACCTAATGCTGTGATTTGGAGAACTCTTCTTGGAGCTTGCAGCATTCATGGAAATCTTAAGTTGGCAGAGAAAGTAAAGGAAAGGCTATATGAACTCGACCCTAAGGATTCAGGCGATCAAGTTCTTTTGTCAAATTTATATGCTGTTGCAGGGAAATGGAAGGACGTTGCCGGTTTAAGAAGATCAATGACTGACCAAAACATCAAGAAAACACCCGGTTGGAGCATGATCGAAGTTGATAAGGTCATGTATCGTTTTGTAGCGGGTGAAAAAGAAGGTAAGTTAAAGGAAGAGGCGAATGAAAAGCTGAGAGAGATAATGGTGAGGCTTCGGATCGAGGGCTACGTGCCTGAGGTTGGCCCCGTTTTGCATGATGTAGAACAAGAGGAAAAAGAGGATTCCATGATTAGACACAGTGAGAAGCTTGCAGTGGCTTTCGGGATGGCAAGAATGGCGGAGGGGAAGACCATAAGAGTGGTGAAGAATCTGAGAACTTGCAGGGACTGCCATGGCGTAATGAAGTTGATCTCAAAAGTTTATAGAGTGGAAATAGTCGTGAGGGATAGAAGTCGCTTCCACTCCTTCAAAGACGGTTCTTGTTCGTGTAGAGATTACTGGTGA 1929 43.44 MSSVDNFILALLSKCKSLVTLRQIHALVMKTGLDSDSVVAGKLLIHCAVTVSDALEYGRRLFLHFPYPDVFMYNTLIRGFSESDSPRNAFSLFVEMRRESMAPPDSFSFAFLFKAAANFKALRIGLQLHRQAVGYGMDNHLFVSTTLISMYADCGCVGSAKKVFEEILDPNVVAWNAVVTACFRCEDLKGAQKMFDQIPVRNLTSWNIMLSGYTKAGKLELARKAFFNMPLKDDVSWSTMIVGFAHNGLFDDAFEFFRELQDLGTGVNEVSLTGVLSACAMAGAFEFGKLLHGFVEKIGYLHITSVNNALIDAYSKCGNVAMAQLVFVRMPGKKSIVTWTAMIAGLAMQGHGKEAIELFHEMQENGIRPDGIAFISILYACSHAGLIEDGWKYFSCMKCVYGIEPSIEHYGCMVDLCGRAGQLQKAFEFVCQMPISPNAVIWRTLLGACSIHGNLKLAEKVKERLYELDPKDSGDQVLLSNLYAVAGKWKDVAGLRRSMTDQNIKKTPGWSMIEVDKVMYRFVAGEKEGKLKEEANEKLREIMVRLRIEGYVPEVGPVLHDVEQEEKEDSMIRHSEKLAVAFGMARMAEGKTIRVVKNLRTCRDCHGVMKLISKVYRVEIVVRDRSRFHSFKDGSCSCRDYW 642
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7693083 7695011 + Bma017141.1 Bma03g00827 79500

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00827 642 Pfam PPR repeat family 334 381 IPR002885 -
Bma03g00827 642 Pfam PPR repeat family 68 117 IPR002885 -
Bma03g00827 642 Pfam DYW family of nucleic acid deaminases 550 642 IPR032867 GO:0008270
Bma03g00827 642 Gene3D Tetratricopeptide repeat domain 308 547 IPR011990 GO:0005515
Bma03g00827 642 Gene3D Tetratricopeptide repeat domain 169 298 IPR011990 GO:0005515
Bma03g00827 642 Gene3D Tetratricopeptide repeat domain 6 168 IPR011990 GO:0005515
Bma03g00827 642 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 202 232 IPR002885 -
Bma03g00827 642 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 233 267 IPR002885 -
Bma03g00827 642 PANTHER OS01G0913400 PROTEIN-RELATED 11 583 - -
Bma03g00827 642 Pfam PPR repeat 173 201 IPR002885 -
Bma03g00827 642 Pfam PPR repeat 205 230 IPR002885 -
Bma03g00827 642 Pfam PPR repeat 409 433 IPR002885 -
Bma03g00827 642 Pfam PPR repeat 145 168 IPR002885 -
Bma03g00827 642 Pfam PPR repeat 235 264 IPR002885 -
Bma03g00827 642 Pfam PPR repeat 308 333 IPR002885 -
Bma03g00827 642 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 335 369 IPR002885 -
Bma03g00827 642 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 69 103 IPR002885 -
Bma03g00827 642 Pfam E motif 452 514 IPR046848 -
Bma03g00827 642 PANTHER - 11 583 - -
Bma03g00827 642 TIGRFAM PPR: pentatricopeptide repeat domain 72 103 IPR002885 -
Bma03g00827 642 TIGRFAM PPR: pentatricopeptide repeat domain 205 229 IPR002885 -
Bma03g00827 642 TIGRFAM PPR: pentatricopeptide repeat domain 337 370 IPR002885 -
Bma03g00827 642 TIGRFAM PPR: pentatricopeptide repeat domain 235 265 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00827 - - - vvi:100243404 953.74
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00827 Bma-Chr3:7693083 Bma05g00984 Bma-Chr5:48342511 1.19E-161 dispersed
Bma07g01372 Bma-Chr7:49347764 Bma03g00827 Bma-Chr3:7693083 2.76E-114 dispersed
Bma14g00833 Bma-Chr14:9313621 Bma03g00827 Bma-Chr3:7693083 3.80E-164 dispersed
Bma03g00827 Bma-Chr3:7693083 Bma05g00256 Bma-Chr5:7098122 2.16E-09 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g549 . . . . . . . . Cmo13g01185 . . . . . . . . . . . . . . . . . . . . . . Cone2ag0848 . . . Lsi02g00070 Csa01g00546 Chy12g01543 Cme12g01996 . . . . . . Bma03g00827 . . . . Cma13g01131 . . . . . Bhi08g01172 . . . Hepe07g2512 . . Cla04g01201 . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010028 0 6 0 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma03g00827 Bma_Chr03 FPKM 21.468079 22.344757 2.315582 2.220823 0.894264 0.588729 1.468728 0.247205 0.150821 0.254051