Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00831 ATGACCTCCATTGCCCTCAAATCCTTCACCGGCCTCCGGGGCGGTTCCGCGGCGGAAACTTTGGCGAAGGGAGGTATAGAGACTTTCGAGAGAATCCGAATTCCAGATGACAAAATGGTATACTATGAGAATCTAGCTGAAATGTATGTTGGGGATGATGTATCGCCAGACTTTTATGGATGGGTTTTCCCCAAATGTGATCACGTGGCAGTAGGCACGGGCACAGTGACACACAAAGGGGACATCAAGAAGTTCCAGCTGGCAACAAGAAACAGAGCCAAAGACAAGATATTGGGTGGAAAAATCATCCGAGTTGAGGCCCACCCAATTCCCGAACACCCCCGACCCCGAAGACTACTAGGACGAGTGGCACTCATTGGAGACGCTGCTGGGTACGTGACAAAATGCTCTGGCGAAGGCATCTATTTTGCAGCCAAGAGCGGAAGGATGTGTGCAGAGGCCATTGTAGAGGGGTCGGAAAATGGGAAGAGAATGGTGAATGAAGGGGACTTGAGGAAGTACTTAGAGGTATGGGATAAGACTTATTGGCCAACTTATAAGGTTTTGGATGTGTTGCAGAAGGTGTTTTACAGATCAAATCCGGCAAGAGAAGCGTTCGTGGAGATGTGTGCGGATGAATACGTGCAGAAGATGACGTTTGATAGCTACTTGTACAAGCGGGTGGCTCCGGGCAATCCATATGCTCATAGGAAATGTGTTCAACAATGGTGCAACGAGAAGAGAGATATTGTTTGTGAAATTTGCTGCCAGCATTTTCAACCTGGTTATGTGGCACCACCACCTGCCCCTAACTTGGAGGATGTCACATTTGATTTCAGTGAGTGGGAAAGACCGGAAACCCCTTTTGATTTGCATAATCGCCGCCTTATGGCAATGGCAACTGCAGAACGTCATTTTCTGGAATCCGAGTATGATGAATATGATGATTCTGCTGCTAATGGATCTTCATTTTGCCGGTCAACTGCTCTAATTTTAATGGGACTATTACTCCTGAGGCATGCTTTATACCTAACTGATGGGGATGAAGAGGATGATATATCAACTTTTTTTTCTCTTTTCTTGCTTCGTGTTGTCGGTTTTCTTCTTCCATGCTACATTATGGCTTGGGCCATCAGCATGCTACAACGACGAAGGCAAAGACAGGAAGCAGCAGCACTTACAGACACTGAAGTCGCACTTATGCTGCAGGCTAGTCAAGGTCCAGACCTAGTATTCACAATAACTCCGGCTGCAGCTGAGGCCCCTGCTGGCGCTTCCCGTCTCGAGCCGCCTCAATTATAA 1302 47.54 MTSIALKSFTGLRGGSAAETLAKGGIETFERIRIPDDKMVYYENLAEMYVGDDVSPDFYGWVFPKCDHVAVGTGTVTHKGDIKKFQLATRNRAKDKILGGKIIRVEAHPIPEHPRPRRLLGRVALIGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEGSENGKRMVNEGDLRKYLEVWDKTYWPTYKVLDVLQKVFYRSNPAREAFVEMCADEYVQKMTFDSYLYKRVAPGNPYAHRKCVQQWCNEKRDIVCEICCQHFQPGYVAPPPAPNLEDVTFDFSEWERPETPFDLHNRRLMAMATAERHFLESEYDEYDDSAANGSSFCRSTALILMGLLLLRHALYLTDGDEEDDISTFFSLFLLRVVGFLLPCYIMAWAISMLQRRRQRQEAAALTDTEVALMLQASQGPDLVFTITPAAAEAPAGASRLEPPQL 433
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7739139 7748958 - Bma017145.2 Bma03g00831 79504

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00831 433 Gene3D - 26 229 IPR036188 -
Bma03g00831 433 PANTHER GERANYLGERANYL DIPHOSPHATE REDUCTASE 30 241 - -
Bma03g00831 433 Pfam Protein of unknown function (DUF3675) 261 378 IPR022143 -
Bma03g00831 433 SUPERFAMILY FAD/NAD(P)-binding domain 67 244 IPR036188 -
Bma03g00831 433 PANTHER OS01G0265000 PROTEIN 30 241 - -
Bma03g00831 433 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 230 261 IPR013083 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00831 K10960 chlP, bchP; geranylgeranyl diphosphate/geranylgeranyl-bacteriochlorophyllide a reductase [EC:1.3.1.83 1.3.1.111] - zju:107419241 419.468
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00831 Bma-Chr3:7739139 Bma14g01619 Bma-Chr14:33929093 2.33E-70 dispersed
Bma07g00308 Bma-Chr7:3747819 Bma03g00831 Bma-Chr3:7739139 4.63E-111 transposed
Bma01g00099 Bma-Chr1:1051882 Bma03g00831 Bma-Chr3:7739139 4.25E-58 wgd
Bma14g01644 Bma-Chr14:34761088 Bma03g00831 Bma-Chr3:7739139 2.45E-63 wgd
Bma15g00158 Bma-Chr15:1664058 Bma03g00831 Bma-Chr3:7739139 1.92E-66 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g554 Blo04g00770 . . . . . . . Cmo13g01189 . . . . . . Cpe20g00017 . . . . . . . . . . . . . . . Cone2ag0845 Cone16ag0170 . . Lsi02g00075 Csa01g00552 Chy12g01538 Cme12g01990 . . . Bda14g00852 . Bpe15g00601 Bma03g00831 . . . . Cma13g01135 . Car13g00966 . . . Bhi08g01164 Tan05g2438 . Lac10g0079 Hepe07g2507 . . Cla04g01196 Cam04g1255 Cec01g1766 Cco01g1813 Clacu04g1285 Cmu04g1261 Cre01g1554 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007596 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 3 1 1 1 1 1 1 1 1 1 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma03g00831 Bma_Chr03 FPKM 0.0 0.0 2.096825 0.0 0.76547 0.715748 0.0 0.0 2.890606 5.266002