Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00840 ATGTCGGACAGTGAAGATCATCAGTTTGAGTCGAAGGCCGATGCTGGAGCTTCCAAAACCTACCCTCAGCAAGCTGGTACTGTTCGCAAAAATGGCTACATCGTCATCAAAGCCCGCCCTTGCAAGGTGGTTGAAGTTTCCACCTCCAAGACTGGAAAGCATGGCCATGCTAAGTGCCACTTTGTTGGAATTGACATTTTCACTGGCAAGAAGTTTGATGATATAGTTCCCTCTTCCATAACTGTGATGTATATTCCTCATGTTAATCGTACTGATTATCAGCTTATCGATATTTCTGAGGATGGATTTGTGAGCTTGCTGACTGAGAATGGAGGTACTAAGGATGATCTTAGGCTCCCATCTGATGATAGTCTGCTTACCCAGATAAAAGATGGTTTTGCTGAGGGAAAAGATCTTGTTGTTACTGTGATGTCTGCCATGGGAGAAGAGCAGATTTGTGCTCTGAAGGACATTGGCCCCAAGTAG 486 44.65 MSDSEDHQFESKADAGASKTYPQQAGTVRKNGYIVIKARPCKVVEVSTSKTGKHGHAKCHFVGIDIFTGKKFDDIVPSSITVMYIPHVNRTDYQLIDISEDGFVSLLTENGGTKDDLRLPSDDSLLTQIKDGFAEGKDLVVTVMSAMGEEQICALKDIGPK 161
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8035180 8037307 - Bma017155.1 Bma03g00840 79513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00840 161 PANTHER BNAA07G09420D PROTEIN 1 158 - -
Bma03g00840 161 SUPERFAMILY Translation proteins SH3-like domain 16 95 IPR008991 -
Bma03g00840 161 PIRSF Transl_init_eIF5A 1 159 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Bma03g00840 161 PANTHER TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER 1 158 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Bma03g00840 161 SMART eIF_5a_2 87 156 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Bma03g00840 161 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 87 156 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Bma03g00840 161 ProSitePatterns Eukaryotic initiation factor 5A hypusine signature. 51 58 IPR019769 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Bma03g00840 161 MobiDBLite consensus disorder prediction 1 22 - -
Bma03g00840 161 Gene3D - 88 160 IPR012340 -
Bma03g00840 161 TIGRFAM eIF_5A: translation elongation factor IF5A 18 155 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Bma03g00840 161 CDD S1_eIF5A 88 158 - -
Bma03g00840 161 Gene3D - 1 87 IPR014722 -
Bma03g00840 161 SUPERFAMILY Nucleic acid-binding proteins 88 158 IPR012340 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma03g00840 Bma06g00164 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00840 Bma-Chr3:8035180 Bma06g00164 Bma-Chr6:2095754 6.87E-108 dispersed
Bma14g01659 Bma-Chr14:35180006 Bma03g00840 Bma-Chr3:8035180 7.48E-99 wgd
Bma15g00140 Bma-Chr15:1486229 Bma03g00840 Bma-Chr3:8035180 3.42E-91 wgd
Bma03g00840 Bma-Chr3:8035180 Bma06g00163 Bma-Chr6:2092183 6.87E-108 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00840 K03263 - mnt:21398335 291.197