Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00844 ATGCACGGCTTAAGGCATTCTCCCTTTAAGCTTGGTAGACATAAAACAGCAGAACCTAAAAATTCTGTTTCTTCTCAGTCAAACCCTTTTGACTCTGATGATGATTTGAAGGCAAAGCAGAATCATTCTTTGCCTAAGGCTCACTCCGACCCGGTCAAAACGAGTCTAACTGTTAGCCCCAATCCTTTTGATGATGATCAAGGAAAGGGGGCTCCCCCACCTTCAAATTCACTGAGTTGGTCTACGAGGAACAAGTACAAGAACGATTTCCGTGACGAGGGAGGATTGGAGAGCCAATCTGTGCAAGAATTGGAAAATTATGCAGTCTACAAGGCTGAAGAAACTACAAATTCAGTCAATGGATGCCTAAAAATTGCTGAGGAGATCCGAGAGGATGCTACCAAAACTTTGGTAACTTTGCATCAACAGGGCGAGCAAATTACCAGGGCCCATATGGTTGCTGCCGACATTGATCATGATCTTAGTCGGGGAGAGAAGCTTCTGGGCAACCTTGGGGGAATGTTTTCCAAGACCTGGAAACCAAAGAAAACTCGTGATATAACAGGCCCTGATACGAGAAGAGATGATTTGTCGAGTAGAAAAGGCAACCACTTGGAGCAGCGGGAGAAGTTGGGATTGAGTCATGGAAACAACGCAAGGTCCAGCTTACGAACTCCATATCCCGAACCAACCGATTCCTATCAGAAAGTAGAGGTGGAAAAGACGAAGCAAGACGATGCACTGTCGGATTTGAGCAATATATTAGGAGAGCTCAAGGAAATGGCAATCGACTATGGGAAATGA 804 45.15 MHGLRHSPFKLGRHKTAEPKNSVSSQSNPFDSDDDLKAKQNHSLPKAHSDPVKTSLTVSPNPFDDDQGKGAPPPSNSLSWSTRNKYKNDFRDEGGLESQSVQELENYAVYKAEETTNSVNGCLKIAEEIREDATKTLVTLHQQGEQITRAHMVAADIDHDLSRGEKLLGNLGGMFSKTWKPKKTRDITGPDTRRDDLSSRKGNHLEQREKLGLSHGNNARSSLRTPYPEPTDSYQKVEVEKTKQDDALSDLSNILGELKEMAIDYGK 267
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8082838 8084349 - Bma017160.1 Bma03g00844 79517

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00844 267 MobiDBLite consensus disorder prediction 1 99 - -
Bma03g00844 267 Gene3D - 95 173 - -
Bma03g00844 267 PANTHER SYNAPTOSOMAL ASSOCIATED PROTEIN 15 266 - -
Bma03g00844 267 MobiDBLite consensus disorder prediction 181 245 - -
Bma03g00844 267 MobiDBLite consensus disorder prediction 181 213 - -
Bma03g00844 267 PANTHER TARGET SNARE COILED-COIL DOMAIN-CONTAINING PROTEIN-RELATED 15 266 - -
Bma03g00844 267 MobiDBLite consensus disorder prediction 214 229 - -
Bma03g00844 267 MobiDBLite consensus disorder prediction 47 62 - -
Bma03g00844 267 SUPERFAMILY SNARE fusion complex 99 169 - -
Bma03g00844 267 MobiDBLite consensus disorder prediction 32 46 - -
Bma03g00844 267 CDD SNARE_SNAP25N_23N_29N_SEC9N 106 170 IPR044766 GO:0005484|GO:0031201
Bma03g00844 267 Gene3D - 235 267 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00844 K18211 SNAP25; synaptosomal-associated protein 25 - cpap:110811172 358.607
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma14g01662 Bma-Chr14:35239843 Bma03g00844 Bma-Chr3:8082838 1.92E-40 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g617 Blo04g00786 . . . . . . . Cmo13g01138 . . . Car10g00205 . . . Cpe04g01473 . . . . . . . . . . . . . . . . . . . . . . . . . Bda14g00867 . . Bma03g00844 . . Cmo10g00232 . Cma13g01086 . Car13g00924 . . Cpe18g00772 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001344 1 5 1 1 1 2 4 2 2 2 1 2 4 2 2 4 2 4 4 2 2 4 2 2 2 2 2 6 4 1 75
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma03g00844 Bma_Chr03 FPKM 1.651951 1.804748 0.0 0.077559 5.304564 5.544914 6.185776 0.0 0.0 0.0