Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00847 ATGAATCCAGATAAATTTACTCATAAGACCAATGAGATGATAGCTGGGGCTCATGAACTAGCTATGACTGCCGGTCATGCGCAATTCACTCCCCTTCATCTTGCAGTTTCTTTAATTAGTGATCCCAGTGGAATCTTTAGGCAAGCAATTGGCAATGCTAGAGGTGAAAACGCCCCTAAAGAAGTGGAGACGGTCTTAAATCGGGTTTTAAAGAAACTCCCATCACAAACCCCTCCTCCGGATGAGATTCCAGCAAGTTCTTCTCTGATCAAAGTAATTAGAAGGGCTCAAGCAGCACAAAAAACAAGAGGGGACACCCATTTAGCTGTAGATCAGCTGATTCTTGGTCTTCTTGAGGATTCTCAGATTGGAGACTTGTTGAAAGAAGCAGGTGTTGCTTCTGCATCAGTGAAGTCCGAGGTTGAAAAGCTTCGTGGAAAAGAAGGGAAGAAAGTAGAGAGTGCTTCTGGCGATACTACATTTCAAGCTTTGAAGACTTATGGTCGAGATCTCGTTGAACAAGCTGGAAAACTAGACCCAGTCATCGGGCGGGATGAGGAAATTAGAAGGGTGGTAAGAATTTTGTCAAGGAGAACCAAGAACAATCCTGTTCTTATCGGAGAGCCTGGAGTAGGTAAAACTGCAGTGGTTGAAGGATTGGCTCAAAGAATTGTGCGAGGAGACATCCCAAGTAATCTAACTGATGTGAGGCTCATTGCACTGGACATGGGTGCTTTAGTCGCTGGAGCTAAATATCGAGGGGAGTTCGAGGAGCGACTAAAGGCTGTTTTGAAAGAAGTAGAAGAAGCATGTGGAAAAGTGATATTGTTCATTGATGAAATTCACTTAGTCTTGGGTGCTGGCCGTACAGAGGGCTCTATGGATGCTGCCAATCTCTTCAAGCCAATGCTTGCTAGAGGTCAGCTTCGTTGTATTGGAGCAACTACACTTGAAGAATACAGAAAATATGTGGAGAAAGATGCAGCATTTGAGAGACGATTTCAGCAGGTGTATGTGGCTGAACCCAGCGTCCCAGATACAATCAGTATTCTTCGAGGGTTGAAAGAGAGATATGAAGGTCATCATGGTGTTAGAATACAAGATCGAGCTCTTATCGTTGCAGCTCAGCTTTCTAGTCGATACATTTCAGGTCGTCATCTTCCTGATAAGGCGATTGATTTAGTTGATGAAGCCTGTGCAAATGTCAGAGTCCAGCTTGACAGTCAGCCAGAAGAAATTGATAACTTGGAAAGGAAGAGAATGCAGCTTGAAATTGAGCTTCATGCACTTGAGAAGGAGAAGGACAAATCTAGCAAAGCTCGTCTTGTTGAAGTGAGGAAAGAGCTTGATGATTTGAGAGATAAGCTTCAGCCCCTATTAATGAAATACAGAAAGGAGAAAGAAAGGATTGATGAGATTCGAAGATTAAAACAGAAAAGGGAAGAGCTTCAGATTGCACTACAAGAGGCTGAAAGAAGATATGATTTAGCCAGGGCTGCAGATTTGCGATATGGTGCAATACAAGATGTGGAAACAGCCATTGCACGAATTGAAGGCAACACAGATGAAAACTTAATGTTGACAGAGACTGTCGGACCTGAGCACATAGCAGAGGTTGTGAGCCGTTGGACTAGTATTCCTGTCACTCGACTTGGCCAGAATGAGAAAGAAAGGATGATTGGGCTTGCTGAGAGGCTGCACAAGAGAGTGGTAGGTCAAGACCAAGCTGTCGATGCAGTGGCAGAGGCAGTCTTAAGGTCAAGGGCGGGTTTAGGAAGGCCGCAACAGCCAACTGGCTCCTTTCTCTTTCTGGGTCCTACTGGTGTCGGCAAGACTGAGCTTGCAAAGGCTTTGGCAGAGCAACTCTTTGATGACGAAAATCTACTTGTGCGAATTGACATGTCAGAGTATATGGAGCAACACTCTGTTTCTCGCCTGATTGGTGCTCCTCCTGGTTATGTTGGACATGAAGAAGGTGGACAACTTACCGAGGCAGTGAGGAGAAGACCTTACAGTGTTGTGCTTTTTGATGAAGTGGAGAAAGCTCACATCTCTGTCTTCAACACTCTTCTTCAAGTTTTAGATGATGGAAGATTAACAGATGGTCAAGGTCAAACCGTCGATTTCAGAAACACAATAATTATTATGACTTCAAACCTCGGAGCCGATCATCTTCGATCAGGTTTATCGGGTAAATCCACCATGCAAGTAGCTCGAGAGCGGGTTTTGCAAGAGGTGAGAAGACACTTCAGGCCGAAGTTGCTCAATCGACTTGATGAAATAGTAGTCTTTGATCCTCTTTCACACGACCAATTGAGGAAGGTGGCTCGATTACAAATGAAATAG 2346 44.37 MNPDKFTHKTNEMIAGAHELAMTAGHAQFTPLHLAVSLISDPSGIFRQAIGNARGENAPKEVETVLNRVLKKLPSQTPPPDEIPASSSLIKVIRRAQAAQKTRGDTHLAVDQLILGLLEDSQIGDLLKEAGVASASVKSEVEKLRGKEGKKVESASGDTTFQALKTYGRDLVEQAGKLDPVIGRDEEIRRVVRILSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDIPSNLTDVRLIALDMGALVAGAKYRGEFEERLKAVLKEVEEACGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARGQLRCIGATTLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTISILRGLKERYEGHHGVRIQDRALIVAAQLSSRYISGRHLPDKAIDLVDEACANVRVQLDSQPEEIDNLERKRMQLEIELHALEKEKDKSSKARLVEVRKELDDLRDKLQPLLMKYRKEKERIDEIRRLKQKREELQIALQEAERRYDLARAADLRYGAIQDVETAIARIEGNTDENLMLTETVGPEHIAEVVSRWTSIPVTRLGQNEKERMIGLAERLHKRVVGQDQAVDAVAEAVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRLIGAPPGYVGHEEGGQLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGQTVDFRNTIIIMTSNLGADHLRSGLSGKSTMQVARERVLQEVRRHFRPKLLNRLDEIVVFDPLSHDQLRKVARLQMK 781
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8104314 8147357 + Bma017163.1 Bma03g00847 79520

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00847 781 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 546 781 IPR027417 -
Bma03g00847 781 Gene3D - 3 148 IPR036628 -
Bma03g00847 781 CDD AAA 571 766 - -
Bma03g00847 781 Gene3D - 550 766 IPR027417 -
Bma03g00847 781 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 708 722 IPR001270 GO:0005524
Bma03g00847 781 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 601 619 IPR001270 GO:0005524
Bma03g00847 781 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 675 693 IPR001270 GO:0005524
Bma03g00847 781 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 646 664 IPR001270 GO:0005524
Bma03g00847 781 Pfam AAA domain (Cdc48 subfamily) 597 761 IPR003959 GO:0005524|GO:0016887
Bma03g00847 781 SUPERFAMILY Double Clp-N motif 4 157 IPR036628 -
Bma03g00847 781 SMART AAA_5 199 344 IPR003593 -
Bma03g00847 781 SMART AAA_5 597 743 IPR003593 -
Bma03g00847 781 Gene3D - 344 544 IPR027417 -
Bma03g00847 781 ProSiteProfiles Clp repeat (R) domain profile. 3 147 IPR004176 -
Bma03g00847 781 Pfam ATPase family associated with various cellular activities (AAA) 204 317 IPR003959 GO:0005524|GO:0016887
Bma03g00847 781 ProSitePatterns Chaperonins clpA/B signature 1. 295 307 IPR018368 GO:0005524
Bma03g00847 781 Pfam Clp amino terminal domain, pathogenicity island component 96 146 IPR004176 -
Bma03g00847 781 Pfam Clp amino terminal domain, pathogenicity island component 17 58 IPR004176 -
Bma03g00847 781 PANTHER ATP-DEPENDENT CLP PROTEASE 4 780 - -
Bma03g00847 781 Pfam AAA lid domain 344 443 IPR041546 -
Bma03g00847 781 CDD AAA 182 337 - -
Bma03g00847 781 Coils Coil 406 440 - -
Bma03g00847 781 Coils Coil 463 500 - -
Bma03g00847 781 ProSitePatterns Chaperonins clpA/B signature 2. 631 649 IPR028299 -
Bma03g00847 781 Gene3D - 150 343 IPR027417 -
Bma03g00847 781 PANTHER CHAPERONE PROTEIN CLPB3, CHLOROPLASTIC 4 780 - -
Bma03g00847 781 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 160 544 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00847 K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB - csv:101221981 1383.24
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma03g00847 Bma06g00155 CCT
Bma03g00847 Bma06g00166 CCT
Bma03g00847 Bma08g00280 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00847 Bma-Chr3:8104314 Bma07g01574 Bma-Chr7:51089426 3.20E-22 dispersed
Bma01g01266 Bma-Chr1:17142392 Bma03g00847 Bma-Chr3:8104314 0 transposed
Bma08g00280 Bma-Chr8:3794538 Bma03g00847 Bma-Chr3:8104314 0 transposed
Bma03g00847 Bma-Chr3:8104314 Bma06g00155 Bma-Chr6:2018170 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g592 Blo04g00779 Blo16g00180 . . . Bpe13g00300 Bma06g00166 . . . Cma10g00209 Cma11g00123 Car10g00196 Car11g00171 . Cpe20g00055 Cpe04g01480 Bhi02g00293 Tan09g2089 . . Hepe09g0095 . . Cla06g01570 Cam06g1735 Cec06g1796 Cco06g1795 Clacu06g1702 Cmu06g1648 Cre06g2459 Cone2ag0827 Cone16ag0189 Cone13ag0054 . Lsi02g00091 Csa01g00571 Chy12g01523 Cme12g01971 . . Bda11g01706 Bda14g00861 . Bpe15g00594 Bma03g00847 . Sed08g0241 Cmo10g00227 Cmo11g00187 Cma13g01093 . Car13g00929 . . Cpe18g00780 Bhi08g01136 Tan05g2418 Cmetu02g1238 Lac10g0118 Hepe07g2490 . . Cla04g01181 Cam04g1237 Cec01g1748 Cco01g1794 Clacu04g1265 Cmu04g1244 Cre01g1538 Lsi06g01445 Csa01g00260 Chy02g02475 Cme02g01861
Vvi17g643 Blo04g00788 . . . Bpe12g00459 . Bma06g00155 . Cmo13g01128 . . . . . . Cpe20g00068 . Bhi02g00694 Tan09g2052 Cmetu02g0330 . . . . Cla06g01547 Cam06g1708 Cec06g1768 Cco06g1769 Clacu06g1675 Cmu06g1621 Cre06g2434 Cone2ag0814 Cone16ag0200 . . Lsi02g00111 Csa01g00590 . Cme12g01952 . . Bda11g01719 Bda14g00871 . Bpe15g00585 Bma03g00847 Bma08g00280 Sed08g2114 . . Cma13g01080 . Car13g00917 . . . Bhi08g01100 Tan05g2372 Cmetu12g0960 Lac10g0140 Hepe07g2473 . . Cla04g01163 Cam04g1221 Cec01g1732 Cco01g1778 Clacu04g1248 Cmu04g1227 Cre01g1523 Lsi06g01422 Csa01g00282 Chy02g02452 Cme02g01838
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002248 4 2 1 2 2 2 4 2 2 3 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 63
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma03g00847 Bma_Chr03 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 1.274127 0.0