Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00860 ATGGGAAGAGGGAGAGTAGTGCTGAAGAGGATAGAGAACAAAGTTAACCGGCAGGTGACATTTGCCAAGAGAAGAAACGGGTTGCTCAAGAAAGCTTATGAACTCTCAGTTCTTTGCGATGCTGAAGTTGGTCTCATCATCTTCTCTAACCGTGGCAAGCTTTATGAGTTCAATAGCAGCTCTAGCATGATGAAAACACTTGAGAGATATCAAAGTTGCATTTATGGTAGCAGACAAGGTAGAGGATCACTCAATGAAAACCAGGAGAACAGTGTGGATGGATATTTGAACTTAAAAGCTACGGTTGAGGTCCTACAGCGTGCTCAGAGAAACATTCTGGGGGAAGATCTGGTCGATTTGAATAAGACCGAACTCAAGCAACTTGAGGATCAATTAGAGGTATCCTTGATGCGTGTCAGGTCCAAAAAGGTGATACGTTTTTGCATACTCACATACGTATACATATATTCATGTCAGCTGGTATATGGGTGTTGGTGA 498 42.57 MGRGRVVLKRIENKVNRQVTFAKRRNGLLKKAYELSVLCDAEVGLIIFSNRGKLYEFNSSSSMMKTLERYQSCIYGSRQGRGSLNENQENSVDGYLNLKATVEVLQRAQRNILGEDLVDLNKTELKQLEDQLEVSLMRVRSKKVIRFCILTYVYIYSCQLVYGCW 165
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8304227 8307055 + Bma017177.1 Bma03g00860 79533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00860 165 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bma03g00860 165 Pfam K-box region 87 143 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bma03g00860 165 PANTHER DEVELOPMENTAL PROTEIN SEPALLATA 1 1 144 - -
Bma03g00860 165 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
Bma03g00860 165 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Bma03g00860 165 ProSiteProfiles K-box domain profile. 88 165 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bma03g00860 165 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Bma03g00860 165 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bma03g00860 165 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bma03g00860 165 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bma03g00860 165 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Bma03g00860 165 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bma03g00860 165 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 144 - -
Bma03g00860 165 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00860 Bma-Chr3:8304227 Bma01g01079 Bma-Chr1:11388175 5.92E-61 dispersed
Bma01g00131 Bma-Chr1:1275757 Bma03g00860 Bma-Chr3:8304227 3.23E-50 wgd
Bma03g00860 Bma-Chr3:8304227 Bma03g00866 Bma-Chr3:8404030 6.24E-98 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57034 PF01486 K-box 1.90E-14 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00860 K09264 K09260 han:110917628 198.749