Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00861 ATGGGGAGGGGAAGAGTGCAGTTGAAGAGGATCGAGAACAAGATCAATCGACAAGTGACCTTTTCGAAGAGAAGGTCTGGGTTGCTGAAGAAAGCCCATGAAATTTCTGTTTTGTGCGACTCGGAGGTTGCTCTGATCGTCTTTTCGACCAAGGGAAAGTTGTTCGAGTACTCCACTAATTCCCGCATGGAAAAGATCATCGAACGGTACGAGAGGTGTACATTCAGAGAACCTCAGGAAAATTTGACGATGCAACAAGTAAAACATAGAGATAAGCTGGAGATTCTGCAAAGAACTCAAAGGAAATTTATGGGAGAAAATCTCGAATCATCAAGCATCAAAGAGCTTCAAAACTTGGAGCAACAGATTGACTCTGCTCTGAGACACATAAGAAGAAGAAAGAACCAACTCATGCTAGACTGTATATCACAGCTTCAGAAAAAGGATAAGGCACTGGAGGACCAAAATAACTCTCTGGTGAAGAAGGTTAAGGAGAAGGAGATATCACTTCGCGAACAGACACAGAATCATGGGATGAGCTCATCCGTCGATCTTCCTCAGCTATTTCATTTCGTAGGTCTCGGTGGATGTAACAATGGAGGTGAAGGAGGAGCGAACCGACAAATATCGAACACGGCCCTGCCTCCATGGATGCTTCCTCTTCCCAAAGAGTAA 675 44.44 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDSEVALIVFSTKGKLFEYSTNSRMEKIIERYERCTFREPQENLTMQQVKHRDKLEILQRTQRKFMGENLESSSIKELQNLEQQIDSALRHIRRRKNQLMLDCISQLQKKDKALEDQNNSLVKKVKEKEISLREQTQNHGMSSSVDLPQLFHFVGLGGCNNGGEGGANRQISNTALPPWMLPLPKE 224
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8310992 8316889 + Bma017178.1 Bma03g00861 79534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00861 224 ProSiteProfiles K-box domain profile. 79 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bma03g00861 224 CDD MADS_MEF2_like 2 74 IPR033896 GO:0000977|GO:0045944
Bma03g00861 224 Coils Coil 142 162 - -
Bma03g00861 224 Gene3D - 13 95 IPR036879 GO:0003677|GO:0046983
Bma03g00861 224 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bma03g00861 224 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bma03g00861 224 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bma03g00861 224 PANTHER MADS BOX PROTEIN 1 176 - -
Bma03g00861 224 Pfam K-box region 81 163 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bma03g00861 224 SUPERFAMILY SRF-like 2 81 IPR036879 GO:0003677|GO:0046983
Bma03g00861 224 Coils Coil 116 136 - -
Bma03g00861 224 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bma03g00861 224 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bma03g00861 224 PANTHER FLORAL HOMEOTIC PROTEIN APETALA 1 1 176 - -
Bma03g00861 224 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Bma03g00861 224 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00131 Bma-Chr1:1275757 Bma03g00861 Bma-Chr3:8310992 2.96E-58 dispersed
Bma03g00861 Bma-Chr3:8310992 Bma06g00742 Bma-Chr6:38543749 1.96E-58 dispersed
Bma04g00848 Bma-Chr4:10689738 Bma03g00861 Bma-Chr3:8310992 2.32E-38 dispersed
Bma14g01676 Bma-Chr14:35661221 Bma03g00861 Bma-Chr3:8310992 4.44E-69 wgd
Bma15g00109 Bma-Chr15:1166027 Bma03g00861 Bma-Chr3:8310992 9.51E-23 wgd
Bma03g00861 Bma-Chr3:8310992 Bma03g00867 Bma-Chr3:8410947 6.08E-74 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57035 PF01486 K-box 1.40E-22 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00861 K09264 - tcc:18604882 256.529