Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00866 ATGGGAAGAGGGAGAGTAGTGCTGAAGAGGATAGAGAACAAAGTTAACCGGCAGGTGACATTTGCCAAGAGAAGAAATGGGTTGCTCAAGAAAGCTTATGAACTCTCAGTTCTTTGCGATGCTGAAGTTGGTCTCATCATCTTCTCTAACCGTGGCAAGCTTTATGAGTTCAATAGCAGCTCTAGCATGATGAAAACACTTGAGAGATATCAAAGTTGCATTTATGGTAGCAGACAAGGTAGAGGATCACTCTATGAAAACCAGGAGAACAGTGTGGATGGATATTTGAACTTAAAAGCTACGGTTGAGGTCCTACAGCGTGCTCAGAGAAACATTCTGGGGGAAGATCTGGTCGATTTGAATAAGACCGAACTCAAGCAACTTGAGGATCAATTAGAGGTATCCTTGATGCGTGTCAGGTCCAAAAAGACTCAGTTCATGACTGATCAGCTGGTTGAACTTCAAAACAGGGAACGAGTCCTTGTTCAGGCTAACAAAGAATTAAGAAGAAAGTTGGAAGAGATTAGTGGACATCTTCATGCTCTACTACCATGGGAAGGCGGTGCCGGCAACCATACCACTCCTCACAGCCGCCTTCCTCAGCCATCTGAAGGGTTTTTCCACCCTTTAGGAAGCAGTCCCGCTGTTCACATTGGATACAATCTAGAGGGCTCAAATGAGGGGAACAATGGAGGTCCATTTCACAATATCAATGGCTTCTTTGCTGGTTGGATGACTTAA 741 44.53 MGRGRVVLKRIENKVNRQVTFAKRRNGLLKKAYELSVLCDAEVGLIIFSNRGKLYEFNSSSSMMKTLERYQSCIYGSRQGRGSLYENQENSVDGYLNLKATVEVLQRAQRNILGEDLVDLNKTELKQLEDQLEVSLMRVRSKKTQFMTDQLVELQNRERVLVQANKELRRKLEEISGHLHALLPWEGGAGNHTTPHSRLPQPSEGFFHPLGSSPAVHIGYNLEGSNEGNNGGPFHNINGFFAGWMT 246
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8404030 8408027 + Bma017184.1 Bma03g00866 79539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00866 246 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bma03g00866 246 Coils Coil 151 174 - -
Bma03g00866 246 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
Bma03g00866 246 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Bma03g00866 246 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bma03g00866 246 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bma03g00866 246 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bma03g00866 246 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bma03g00866 246 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bma03g00866 246 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bma03g00866 246 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 232 - -
Bma03g00866 246 PANTHER DEVELOPMENTAL PROTEIN SEPALLATA 1 1 232 - -
Bma03g00866 246 Gene3D - 13 106 IPR036879 GO:0003677|GO:0046983
Bma03g00866 246 Pfam K-box region 88 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bma03g00866 246 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Bma03g00866 246 Coils Coil 125 145 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00866 Bma-Chr3:8404030 Bma06g01341 Bma-Chr6:50356222 1.56E-78 dispersed
Bma03g00860 Bma-Chr3:8304227 Bma03g00866 Bma-Chr3:8404030 6.24E-98 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57036 PF01486 K-box 1.70E-22 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00866 K09264 - ini:109193499 277.33