Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00867 ATGGGGAGGGGAAGAGTGCAGTTGAAGAGGATCGAGAACAAGATCAATCGACAAGTGACCTTTTCGAAGAGAAGGTCTGGGTTGCTGAAGAAAGCCCATGAAATTTCTGTTTTGTGCGACTCGGAGGTTGCTCTGATCGTCTTTTCGACCAAGGGAAAGTTGTTCGAGTACTCCACTAATTCCCGCATGGAAAAGATCATCGAACGGTACGAGAGGTGTACATTCAGAGAACCTCAGGTTCATGCCATAACTATGAAGAAATGTAACAATGGAACTGAACATATTTTGCACATTTATTGGAAAAATATGGAGGTTCTTTACAGGAAATTTATGGGAGAAAATCTCGAATCATCAAGCATCAAAGAGCTTCAAAACTTGGAGCAACAGATTGATTCTGCTCTGAGACACATAAGAAGAAGAAAGGTAGAATCCTGA 435 41.61 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDSEVALIVFSTKGKLFEYSTNSRMEKIIERYERCTFREPQVHAITMKKCNNGTEHILHIYWKNMEVLYRKFMGENLESSSIKELQNLEQQIDSALRHIRRRKVES 144
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8410947 8416003 + Bma017185.1 Bma03g00867 79540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00867 144 PANTHER MADS BOX PROTEIN 1 142 - -
Bma03g00867 144 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bma03g00867 144 CDD MADS_MEF2_like 2 74 IPR033896 GO:0000977|GO:0045944
Bma03g00867 144 SUPERFAMILY SRF-like 2 83 IPR036879 GO:0003677|GO:0046983
Bma03g00867 144 Pfam K-box region 101 142 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bma03g00867 144 Gene3D - 13 88 IPR036879 GO:0003677|GO:0046983
Bma03g00867 144 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL8 1 142 - -
Bma03g00867 144 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bma03g00867 144 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bma03g00867 144 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bma03g00867 144 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bma03g00867 144 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Bma03g00867 144 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bma03g00867 144 Coils Coil 123 143 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00867 Bma-Chr3:8410947 Bma06g00742 Bma-Chr6:38543749 4.12E-57 dispersed
Bma03g00861 Bma-Chr3:8310992 Bma03g00867 Bma-Chr3:8410947 6.08E-74 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57037 PF01486 K-box 2.90E-11 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00867 K09264 - tcc:18604882 183.341