Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00875 ATGGGGAGCGATAGCGAGAACGAGAAGTCCATTCAGAAGGAGAGAGAGAGGAAGAAAATGTTGAATCTTGCTCCCATTGCCAAACCACTCGCCGGGAAGAAGCTCTGCAAGCGTACCCTCAAGCTCGTCGAAGAGGTATTTCATCTGGTTTCTGCTGCTGAGCACAAATGCTTGAAGCGTGGTGTGAAGGAGGTTGTTAAAAGCATAAGGCGCGGCCAAAAGGCTGGTAACATATCGCCTATCGATGTTATCACCCATGTTCCAATCTTGTGTGAAGAGGCCGAAATTCCATATGTATATGTTCCTTCGAAGGAAGATCTTGCTAGTGCAGGGGTAACCAAAAGGCCAACATGTTGTGTTCTGGTTCAAACTAAGCCGAACAAGGGGGAGCTAGCTCAGGAGGATCAAGATAAGCTCAAGGCCGAGTATGCACAGGTTGTAGCAGAAGTGTCTGGGCTAACAACTACTCTTTTTTGA 477 47.59 MGSDSENEKSIQKERERKKMLNLAPIAKPLAGKKLCKRTLKLVEEVFHLVSAAEHKCLKRGVKEVVKSIRRGQKAGNISPIDVITHVPILCEEAEIPYVYVPSKEDLASAGVTKRPTCCVLVQTKPNKGELAQEDQDKLKAEYAQVVAEVSGLTTTLF 158
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8516859 8518766 - Bma030995 Bma03g00875 79548

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00875 158 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 2 156 - -
Bma03g00875 158 SUPERFAMILY L30e-like 20 132 IPR029064 -
Bma03g00875 158 Gene3D - 17 151 IPR029064 -
Bma03g00875 158 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 50 126 IPR004038 -
Bma03g00875 158 PANTHER - 2 156 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00875 K11129 NHP2, NOLA2; H/ACA ribonucleoprotein complex subunit 2 - gmx:100305515 245.743
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00875 Bma-Chr3:8516859 Bma07g00585 Bma-Chr7:8411384 3.00E-08 dispersed
Bma03g00875 Bma-Chr3:8516859 Bma01g00431 Bma-Chr1:3588064 4.02E-09 transposed
Bma03g00875 Bma-Chr3:8516859 Bma06g01063 Bma-Chr6:47456573 3.65E-09 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g402 Blo04g00807 . . . . . . . . Cmo18g00014 . . . . . . . . . . . . . . . . . . . . . Cone2ag0778 . . Cone19ag0021 Lsi02g00149 Csa01g00634 . . . . . Bda14g00900 . Bpe15g00558 Bma03g00875 . . . . Cma13g01052 Cma18g00013 Car13g00885 . . . . . . . . . . Cla04g01124 Cam04g1178 Cec01g1690 Cco01g1737 Clacu04g1206 Cmu04g1185 Cre01g1483 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010319 1 1 1 1 1 1 1 0 1 1 0 1 1 1 1 2 1 3 1 1 1 1 1 1 1 1 1 2 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma03g00875 Bma_Chr03 FPKM 19.630184 19.720959 6.242907 6.422556 11.578566 13.618802 12.341816 1.688916 1.88396 1.992288