Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00879 ATGGAACCGGTTGACATAGTAGGTAAATCCAAGGAGGACGCTTCGCTTCCAAAAGCAACAATGACCAAAATTATCAAGGAAATGCTCCCACCTGATGTGCGTGTTGCAAGGGATGCTCAAGATCTTCTGATCGAGTGTTGTGTAGAGTTCATAAATCTTGTATCATCAGAGTCAAATGAAGTTTGTAACAGAGAAGAGAGACGAACCATCGCGCCTGAGCATGTGCTCAAGGCTTTGGAGGTGCTTGGGTTTGGCGATTACATTGAAGAAGTTTTTGCAGCTTATGAACAACACAAGCTTGAAACCATGCAAGACTCCTTGAAAAGTGGGAAGTGGAGCAATGGAGCCAAAATGTCAGAGGAAGAAGCATTGGCCGAGCAGCAAAGAATGTTTGCCGAGGCACGTGCAAGAATGAATGGCGGTGTCGCTTCTGAAAAGCAACCTGAGTCGAACCAAAGTTTAGAGAGCTAA 471 45.22 MEPVDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCNREERRTIAPEHVLKALEVLGFGDYIEEVFAAYEQHKLETMQDSLKSGKWSNGAKMSEEEALAEQQRMFAEARARMNGGVASEKQPESNQSLES 156
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8582910 8587609 + Bma017197.1 Bma03g00879 79552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00879 156 MobiDBLite consensus disorder prediction 136 156 - -
Bma03g00879 156 PANTHER PROTEIN DR1 HOMOLOG 1 155 IPR044255 -
Bma03g00879 156 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 14 79 IPR003958 -
Bma03g00879 156 Gene3D Histone, subunit A 5 146 IPR009072 GO:0046982
Bma03g00879 156 Coils Coil 117 137 - -
Bma03g00879 156 SUPERFAMILY Histone-fold 12 142 IPR009072 GO:0046982
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00879 Bma-Chr3:8582910 Bma09g00661 Bma-Chr9:44215882 4.41E-103 dispersed
Bma03g00879 Bma-Chr3:8582910 Bma08g00961 Bma-Chr8:48622251 1.47E-18 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57039 PF00808 CBFD_NFYB_HMF 1.60E-22 CL0012 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00879 K21751 - jre:109017784 281.952