Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00894 ATGGCTGAATTTTCTTCAGAGTTGCAGAGTTTGAAGCTCTCTTTTCCTTTCATGGAAGCTGATCCAAACGTGGAGCCAATGAACCAAGTAGAAGCTTTCAATCCTAGTCTTTTCCATGACTTCCAAAACATGATCAATTTCCACCCCTTTCTTTCTTTCACAAATGATGTTTCATTTTCCCACCCTACTCCTGAATTCTCCGAAAATTTATCGGAAAGCTTTCCGAGCTCGATCCGACAATCGACCGAGTTCATCGTGCCGGCTTCCGAACTGACTGTCGTCGAAGAAAACGAGAGGAAAAAGAGGAAATCTATAAAAGTAGCAGAAAACAGCTCTACGAACTCATGTGTTGAAGTTTGTGACAGTGGAATTCACAGAAAAAATAGCTCTGGAAGAGGAAAGAAGGCGAAGAGAATTGAGCAAGAAGAAGAAGAAAAGCCCAAAGAAGTCGTCCATGTTAGAGCTAAAAGAGGTCAAGCTACAGACAGTCACAGTATAGCAGAAAGACTGAGAAGAGGAAAAATCAATGAAAGATTAAGACACTTGCAAGACATCGTTCCTGGTTGCTACAAGACGATGGGAATGGCAGTGATGTTGGATGAGATAATTAATTACGTTCAGTCGTTGCAGAATCAGGTTGAGTATGGAACATATCAACGTCAAATTGTTGTTGATGACTTAAACAAAAAATGGAAGCGAATAATTGCAAACTCCTCGATGACAACCCCATTAGAGCCCTGTGAATGGTTGAACAAGCTTTTCATTGAGGTTTGGACGAATCACTTTAACCCCAAGCTTTCACGCAGATTTTCGTCCATTGTTGAGAAACAGTTAAAGCACCGAAAACCAAAGTTAATAGAAAAAGTTGAACTGCAGGAGTTTTCTCTCGGTTCATGCCCTCCGTGCTTGGGTTTGAATGGAACTAGATGGTCATCTTCTGGCGATCAGAAAATTATGCAAATGGGTTTTGATTGGGACACAAATGAAATGAGCATTCTTTTACTAGCTAAGCTGGCCAAACCTTTTATGGGAACTGCACGGATCGTTATTAACAGTCTTAACATAAAAGGCGAGCTTCTTTTGATGCCTATTTTGGATGGAAGAGCAATTCTTTATTCATTTATGTCAATTCCTGATGTAAGAATAGGAGTTGCTTTTGGGAGTGGCGGAAGTCAAACATTACCAGCAACAGAGCTCCCTGGCGTTTCTTCTTGGCTGGTTAAACTTTTTACTGATACCTTAGTCAAGACAATGGTTGAACCTCGTCGCCGTTGTTTCTCTTTGCCAGCTGTAGATTTGAGGAAAAAAGCTGTTGGTGGTATCATATACGTAACAGTTGTTTCGGGCAACAAACTTTTCAAGAGTAGCTTGAGAGGAAGCCCATCGGGTAAGCTACATAGCTATTCTATGAATGGTTTAGCTGACAGCCATGGGCATGGGAGCTTTGGCGAAAAAGACTGGAATACATTTGTTGAGGTTGAGCTCGAAAAACTTAGTAGGAAAACCGACAAACGATCTGGCTCAAATCCTACTTGGGATTCAACGTTTAATATGATTTTACATGGCAACACGGGAATTCTTCGATTCAACCTTTATGAGTGCAATCCAAATCACATGAAGTATGATTATCTTGCGAGTTGTGAGATTAAGGTGAAGTATGATGCAGATGATTCCACAACATTTTGGGCTATAGGACCTGACTGCTCTGTGATAGCCAAGCATGCTGAGTTTTGTGGCAAAGAAGTTGAAATGGTGGTTCCATTTGAAAGGGTCAATACTGGAGATTTGACAGTAAAGCTTGTCTTAAAAGAATGGCAATTCAGTGATGGTTCGCACAGCTCAAACCATTCACAAGGAGGATCACAGCCATTCTATAAATCATCAAAATTACTCGCAAAAACAGGGAGAAAAATTAATATATCTCTTGTTGAAGGAAAGGATCTCGTTTCTAGATCTGGGAAATGTGACCCATATGTTAAGTTGCAGTATGGAAAGACTCTCCAAAGAACTAGAACTGCCCATTCTTTCAATCCATTCTGGAATCAGAAGTTTGAATTTGATGAGATAGGAGATGGTGAATACCTCAAGATAAAATGCCTCAGTGAAGATACTTTTGGAGATGATAATATTGGCAGTGCGAGAGTCAACTTAGAAGGATTGGCGGAAGGATCAACCAGGGACGTTTGGATCCCCCTTGAAAATGTCTCATCGGGAGAATTAAGACTTCAAATAGAAGCTGTACATGTCGATGACAATGAAGGATCAAAGGGCTCAACTTTAGGTTCAAGCAAACGATGGATAGAACTCGTTCTCCTCGAAGCAAGAGACCTTATAGCAGCCGATCTTAGAGGAACAAGCGATCCATACGTTAGAGTACACTATGGAGACTTGAAGAAAAGAACTAAGGTTATGTACAAAACATTGAATCCAAAGTGGAATCAAACGTTAGAATTTCCGGACGACGGTAGTCCACTGATATTGCATGTAAAAGATCACAATGCCTTGTTACCCACGTCTAGTATCGGCGATTGTGTAGTTGAATATCAAGGTTTGCCTCCGAACCAAATTTTCGACAAGTGGATACCCCTCCAAGGTGTCAAAAGGGGAGAGCTTCACATTCGAATCACTAGAAAAGTTCCGGAGCTTGAGCAGAGAACTAGTTTGGAGTCCAGACCCAGCCTGGATTCAGAGTTTTCATTGGATAAAGCACATCAGATTTCAGACCAGATGAAACAAACGATGAACAAGTTTCAAACATTGATAGAAGATGGAAATCTCGAAGGACTATCGACGGCTTTGAGTGAGCTGGAGAGTCTGGAAGACCTGCAAGAAGATTATATGTTGCAGCTTGAAACTGAGCAAATGCTTCTTGTCAACAAGATCAAGGAACTTGGGCAGGAGATTCTTAACTCCCCACCTTCCTTTGCCGGAAAATCCCACAGTTGGAAGTGA 2952 41.23 MAEFSSELQSLKLSFPFMEADPNVEPMNQVEAFNPSLFHDFQNMINFHPFLSFTNDVSFSHPTPEFSENLSESFPSSIRQSTEFIVPASELTVVEENERKKRKSIKVAENSSTNSCVEVCDSGIHRKNSSGRGKKAKRIEQEEEEKPKEVVHVRAKRGQATDSHSIAERLRRGKINERLRHLQDIVPGCYKTMGMAVMLDEIINYVQSLQNQVEYGTYQRQIVVDDLNKKWKRIIANSSMTTPLEPCEWLNKLFIEVWTNHFNPKLSRRFSSIVEKQLKHRKPKLIEKVELQEFSLGSCPPCLGLNGTRWSSSGDQKIMQMGFDWDTNEMSILLLAKLAKPFMGTARIVINSLNIKGELLLMPILDGRAILYSFMSIPDVRIGVAFGSGGSQTLPATELPGVSSWLVKLFTDTLVKTMVEPRRRCFSLPAVDLRKKAVGGIIYVTVVSGNKLFKSSLRGSPSGKLHSYSMNGLADSHGHGSFGEKDWNTFVEVELEKLSRKTDKRSGSNPTWDSTFNMILHGNTGILRFNLYECNPNHMKYDYLASCEIKVKYDADDSTTFWAIGPDCSVIAKHAEFCGKEVEMVVPFERVNTGDLTVKLVLKEWQFSDGSHSSNHSQGGSQPFYKSSKLLAKTGRKINISLVEGKDLVSRSGKCDPYVKLQYGKTLQRTRTAHSFNPFWNQKFEFDEIGDGEYLKIKCLSEDTFGDDNIGSARVNLEGLAEGSTRDVWIPLENVSSGELRLQIEAVHVDDNEGSKGSTLGSSKRWIELVLLEARDLIAADLRGTSDPYVRVHYGDLKKRTKVMYKTLNPKWNQTLEFPDDGSPLILHVKDHNALLPTSSIGDCVVEYQGLPPNQIFDKWIPLQGVKRGELHIRITRKVPELEQRTSLESRPSLDSEFSLDKAHQISDQMKQTMNKFQTLIEDGNLEGLSTALSELESLEDLQEDYMLQLETEQMLLVNKIKELGQEILNSPPSFAGKSHSWK 983
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8758240 8777735 - Bma017216.1 Bma03g00894 79567

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00894 983 Gene3D - 156 234 IPR036638 GO:0046983
Bma03g00894 983 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 157 219 IPR036638 GO:0046983
Bma03g00894 983 Pfam C2 domain 638 732 IPR000008 -
Bma03g00894 983 Pfam C2 domain 768 863 IPR000008 -
Bma03g00894 983 Pfam C2 domain 467 553 IPR000008 -
Bma03g00894 983 MobiDBLite consensus disorder prediction 127 147 - -
Bma03g00894 983 CDD C2 767 863 - -
Bma03g00894 983 PANTHER OS01G0128800 PROTEIN 202 977 - -
Bma03g00894 983 Gene3D C2 domain 439 569 IPR035892 -
Bma03g00894 983 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 159 209 IPR011598 GO:0046983
Bma03g00894 983 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 434 553 IPR035892 -
Bma03g00894 983 CDD C2 488 558 - -
Bma03g00894 983 CDD C2 638 732 - -
Bma03g00894 983 ProSiteProfiles C2 domain profile. 736 861 IPR000008 -
Bma03g00894 983 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 638 745 IPR035892 -
Bma03g00894 983 ProSiteProfiles C2 domain profile. 617 730 IPR000008 -
Bma03g00894 983 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 763 876 IPR035892 -
Bma03g00894 983 PANTHER PLANT SYNAPTOTAGMIN 202 977 - -
Bma03g00894 983 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 240 429 IPR031468 GO:0008289
Bma03g00894 983 Pfam Helix-loop-helix DNA-binding domain 163 210 IPR011598 GO:0046983
Bma03g00894 983 Gene3D C2 domain 749 878 IPR035892 -
Bma03g00894 983 Gene3D C2 domain 626 748 IPR035892 -
Bma03g00894 983 SMART C2_3c 637 729 IPR000008 -
Bma03g00894 983 SMART C2_3c 771 860 IPR000008 -
Bma03g00894 983 SMART C2_3c 441 563 IPR000008 -
Bma03g00894 983 SMART finulus 165 215 IPR011598 GO:0046983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00894 - - - csv:101213500 1170.61
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00894 Bma-Chr3:8758240 Bma06g00810 Bma-Chr6:41583850 3.41E-33 dispersed
Bma08g00060 Bma-Chr8:764530 Bma03g00894 Bma-Chr3:8758240 8.14E-31 transposed
Bma12g01232 Bma-Chr12:45248292 Bma03g00894 Bma-Chr3:8758240 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g316 Blo04g00823 . Bda06g00806 . . . . . Cmo13g01065 Cmo18g00035 . Cma11g00273 Car10g00217 Car11g00249 . Cpe20g00121 . . . . . . . . . . . . . . . . . Cone13ag0280 . Lsi02g00181 Csa01g00664 Chy12g01439 Cme12g01877 . Blo15g00070 . Bda14g00929 . Bpe15g00523 Bma03g00894 . Sed08g2181 Cmo10g00245 Cmo11g00278 Cma13g01024 Cma18g00042 Car13g00859 Car18g00036 Cpe09g01138 . Bhi08g01232 Tan05g2269 Cmetu12g1130 Lac10g0236 Hepe07g2393 . . Cla04g01093 Cam04g1144 Cec01g1654 Cco01g1703 Clacu04g1172 Cmu04g1153 Cre01g1448 . Csa01g00387 . Cme02g01738
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002821 1 3 2 1 1 1 4 1 2 1 1 2 3 2 2 3 2 1 2 1 2 2 2 2 2 1 2 3 2 2 56
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57042 PF00168 C2 1.30E-17 CL0154 Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma03g00894 Bma_Chr03 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.138384 0.0