Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00898 ATGGCAGTTCAGCAAATGGATGGAGCTGACGGTGATGGAGAGGGAGTGCCGTGCAATTCGATTAATAACGTAGATTCTACTCCGTCTACCTCATCGGGTGAGTGCTGTTTGACGAGCTCAGAGCCAATGTCTCCCATTCTTATTTTCTGGTTCTTCCACAAAGCGATTCGCAATGAGCTTGACGAGCTGCACCGATTGGCTATGGCTTTTGCCACCGCCCGTAGATGCGACATTGGGGTGCTTCGGGAGCGGTACCAGTTCATAAGATCGATATATAAGCACCATTCCAATGCTGAAGACGAGAAAACTCGAGTATTGTTTAACGCTATGCATCATGCAATAAATTCCATAACGCATCATCAATTCAACATGAACTATGTATTTTCAATGCTTATTGAGTATTTCTCTCATGAAGAACAAGCATCTTTGGCCTGGCAGTTTTTATGCAGCATTCCAGTGGTTACGATGGCTGAATTCCTTCCTTGGCTTTCTTCATCTATTTCATCCAATGAAATTCAAGATTTGCACAAGTGTCTAAGAAAAGTAGATTCCTCGGGAAAAACTTCTTCAAACGGTAAATTAACTGCTTTGCTTGCGGAATTCAAGTTTATTTCTGTCTATTTTCTCTATTTTGTTGAGTTAATAAAGGTATTGTTTATTCAGATCATTTTCACATGGATGGGAAGCAAAGATATTGCTAACATCATTGAAAGTTGTGTACATGATTCTCGTGCCTGTGTGGATGTTGTGGCCAAGAAATCAACTCATCAAACAGATGAAGTTAACTCGACACGTGTATCAACAACAACTAGGAAAAGGAAATATTTTTACTCTAGTGCAGACGCTTTTGATAGCATTGATAGACATCCAATTAACGATATATTACTTTGGCTCAATGCTATAAAAAATGAGTGGAAGAAGATATCTCAGGAGGTTGAGAAGATAAAGCTTTCTGGAGGTTTCACAGATATATCAGCATTCAATGAGAGGTTGCAATTCATTATCGAAGTTTGCATTTTTCGCAGTGTTTCTAAGGACAGGCTCATATTTCCTGCAGTAGATGGAGAATTCTCTTTTCTTCGAGAACATGCCCAAAAAAAAAATCAGTTTAATAAGTTCAGATATTTGATGGAAAAAATTAAGAATGTAGGTGAAAATTCTTCTGCATCTGAACTTTACGTCATTCCACTGGCTCGGAAGGTATTCAGCTTTAAAAAACAAAGAGAACTTTTGTATCGAAGCTTGTGTACGATGCCCTTAAAATTGATTGAACGTTTCTTACCATGCTTTATTGGATTATTAACTGATGCTGAAGCCAGAGATTTTCTTAAAAACAAAAAATTGGCAGTCCCTGATATTCAAAGTTTGGAACAGAATGATCAGATGTTCAAACCTGGTTGGAAAGATATTTTTCGGATGAATGAAAAAGAACTTAAATCAGAGATCGATAAGGCTGATCAGGATTTGACTCTTGACCCGAGGAGAAAGACATATCTCGTCGAGAATCTTATGACTGGTCGCTGGATTGCTGCTCAGCAGAAGTTGCTTCAAGCAGAGGGAGAAACTTCCAACAGTGAAGATGTTCCAGGTCGCTCACCTTCATTTCGAGATCCAGAGAGAGAAGTCTTCGGATGTGAACATTACAAAAGAAACTGCAAACTTCTAGCTGCTTGCTGTGGCAAGTTGTTTACTTGTTGGTTTTGTCATGATAATGTCAGCGACCACTCCATGGATAGCAACATCAAAATGATGTGTATGCTCTGTCTCAATGTCCAGCCAGTTGGACCAATATGCATTATGCCTTCTTGCAATGGCTTTTCAATGGGAAAATACTATTGCAATATTTGTAAATTTTTTGATGACGAAAGGAGCGTATATCATTGTCCATTTTGCAACATATGCCGTGTTGGTACTGGTCTTGGGATCGATGTTTTTCATTGTATGACTTGTAATTGCTGCCTTGGTACAAAGGCAGTGAACCACAAATGCCTAGAGAAAAGTTTAGAGATAAATTGCCCCATTTGCTGTGACTTTTTGTTCACCTCCAGTGCAACAGTCAAACCTTTACCTTGTGGGCATTACATGCATTCAGCTTGCTTTCAGGCATACACCTGCAGCCATTACACCTGTCCAATTTGCAGCAAATCATTAGGAGATATGTCCGTTTATTTTGACATGCTCGATGCATTGTTGGCTGCTGAGGAGCTTCCCGAGGAGTACAAGAATCAGACTCAGGACATACTTTGTAACGACTGCAATGAAAAGGGGACGTCGGGATTCCACTGGGTACATCACAAGTGCAGATTTTGCGGCTCTTACAACACTCGCGTAATCAAGAGCGAGAAGAAAAACGTCGGCTGGTGTTCCTCCGCTCAGTGA 2379 40.23 MAVQQMDGADGDGEGVPCNSINNVDSTPSTSSGECCLTSSEPMSPILIFWFFHKAIRNELDELHRLAMAFATARRCDIGVLRERYQFIRSIYKHHSNAEDEKTRVLFNAMHHAINSITHHQFNMNYVFSMLIEYFSHEEQASLAWQFLCSIPVVTMAEFLPWLSSSISSNEIQDLHKCLRKVDSSGKTSSNGKLTALLAEFKFISVYFLYFVELIKVLFIQIIFTWMGSKDIANIIESCVHDSRACVDVVAKKSTHQTDEVNSTRVSTTTRKRKYFYSSADAFDSIDRHPINDILLWLNAIKNEWKKISQEVEKIKLSGGFTDISAFNERLQFIIEVCIFRSVSKDRLIFPAVDGEFSFLREHAQKKNQFNKFRYLMEKIKNVGENSSASELYVIPLARKVFSFKKQRELLYRSLCTMPLKLIERFLPCFIGLLTDAEARDFLKNKKLAVPDIQSLEQNDQMFKPGWKDIFRMNEKELKSEIDKADQDLTLDPRRKTYLVENLMTGRWIAAQQKLLQAEGETSNSEDVPGRSPSFRDPEREVFGCEHYKRNCKLLAACCGKLFTCWFCHDNVSDHSMDSNIKMMCMLCLNVQPVGPICIMPSCNGFSMGKYYCNICKFFDDERSVYHCPFCNICRVGTGLGIDVFHCMTCNCCLGTKAVNHKCLEKSLEINCPICCDFLFTSSATVKPLPCGHYMHSACFQAYTCSHYTCPICSKSLGDMSVYFDMLDALLAAEELPEEYKNQTQDILCNDCNEKGTSGFHWVHHKCRFCGSYNTRVIKSEKKNVGWCSSAQ 792
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8870137 8878308 - Bma017223.1 Bma03g00898 79571

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00898 792 SUPERFAMILY Zinc hairpin stack 609 665 IPR037275 -
Bma03g00898 792 ProSiteProfiles Zinc finger CTCHY-type profile. 608 671 IPR017921 -
Bma03g00898 792 SUPERFAMILY RING/U-box 670 720 - -
Bma03g00898 792 Pfam CHY zinc finger 545 618 IPR008913 GO:0008270
Bma03g00898 792 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 390 455 - -
Bma03g00898 792 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 26 117 - -
Bma03g00898 792 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 121 184 - -
Bma03g00898 792 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 218 393 - -
Bma03g00898 792 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 455 785 - -
Bma03g00898 792 Gene3D - 742 786 - -
Bma03g00898 792 PANTHER CHY ZINC FINGER PROTEIN 390 455 - -
Bma03g00898 792 PANTHER CHY ZINC FINGER PROTEIN 218 393 - -
Bma03g00898 792 SMART ring_2 672 713 IPR001841 -
Bma03g00898 792 CDD RING-H2_Pirh2 671 714 - -
Bma03g00898 792 Pfam Zinc-ribbon 719 776 IPR039512 -
Bma03g00898 792 Gene3D nmb1532 protein domain like 44 125 - -
Bma03g00898 792 Pfam Ring finger domain 671 713 IPR001841 -
Bma03g00898 792 CDD Hr-like 52 111 - -
Bma03g00898 792 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 668 716 IPR013083 -
Bma03g00898 792 SUPERFAMILY CHY zinc finger-like 538 599 IPR037274 GO:0008270
Bma03g00898 792 MobiDBLite consensus disorder prediction 1 36 - -
Bma03g00898 792 PANTHER CHY ZINC FINGER PROTEIN 26 117 - -
Bma03g00898 792 PANTHER CHY ZINC FINGER PROTEIN 121 184 - -
Bma03g00898 792 PANTHER CHY ZINC FINGER PROTEIN 455 785 - -
Bma03g00898 792 ProSiteProfiles Zinc finger CHY-type profile. 538 605 IPR008913 GO:0008270
Bma03g00898 792 ProSiteProfiles Zinc finger RING-type profile. 672 714 IPR001841 -
Bma03g00898 792 MobiDBLite consensus disorder prediction 19 36 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00898 K16276 K16276, BTS; zinc finger protein-like protein - cpap:110813349 763.837
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma03g00898 Bma12g01234 CCT
Bma03g00898 Bma12g01234 ECH
Bma03g00898 Bma08g00059 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00898 Bma-Chr3:8870137 Bma08g00059 Bma-Chr8:750624 5.98E-08 dispersed
Bma05g01058 Bma-Chr5:49283487 Bma03g00898 Bma-Chr3:8870137 5.26E-48 transposed
Bma01g02148 Bma-Chr1:77978920 Bma03g00898 Bma-Chr3:8870137 8.14E-50 transposed
Bma02g00879 Bma-Chr2:47092353 Bma03g00898 Bma-Chr3:8870137 2.23E-40 transposed
Bma12g01234 Bma-Chr12:45293119 Bma03g00898 Bma-Chr3:8870137 4.00E-97 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g299 Blo04g00831 . Bda06g00810 Bda15g00514 Bpe12g00694 . . Bma12g01234 . . Cma10g00305 Cma11g00284 Car10g00290 Car11g00258 . . Cpe04g01394 . . . . . . . Cla06g01457 Cam06g1609 Cec06g1671 Cco06g1665 . . . . . Cone13ag0306 . . . . . Blo13g00170 Blo15g00066 . . Bpe07g01039 Bpe15g00528 Bma03g00898 Bma08g00059 . Cmo10g00326 Cmo11g00287 . . . . . Cpe18g00810 . . . . . . . . . . . . . . Lsi06g01320 Csa01g00206 Chy02g02353 Cme02g01729
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009308 0 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 3 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma03g00898 Bma_Chr03 FPKM 7.679901 8.027948 6.94135 5.650217 1.88331 1.655982 2.575588 2.716251 3.299555 2.971665