Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00902 ATGGACAAGATGATTTCCACTGCTTCTGGGGAGGTCACCATTACTAACGACGGTGCGACGATTCTCAACAAAATGGAGGTTCTTCATGTTAGTGATCACCAACCCCTTCCACAACCGATGTGGGATATCCCAACACTTCAACCCGCTGCGAAAATGCTCGTTGAGCTCTCTAAGTCTCAGGACGCCGCTACCGGAGATGGAACCACTACTGTTGTCCTTATTGCAGGTGCGCTTCTGAAACAATGCCTTGTTCTTTTGTCTCATGGGATTCATCCTACTGTTATCTCTGATTCGCTCCATAAGGCAGCCATTAAAGCCGTTGATGTGCTAACGGCCATGGCGGTTCCTGTTGAGCTATCAGACAGAGAATCTCTCATTAAGTCCGCGAGTACTTCACTCAATAGTAAGGTTGTTAGTCAGTATTCCAGTCTGCTTGCGCCGCTGGCGGTAGATTCTGTACTTTCTGTGGTGAACTCTGAGAAGCCAGATTTGGTTAATTTGAGAGATATTAAGATAGTGAAGAAGCTTGGTGGTACTATAGATGATACCGAGCTAGTCAAGGGTTTGGTCTTCGATAAGAAGGTTAGTCATGCTGCTGGTGGACCAACCAGAATGGAGAATGCGAAGATTGCTGTGATTCAATTCCAGATTTCACCACCGAAGACTGACATCGAGCAAAGCATTGTTGTTTCTGATTATACTCAGATGGATAGGATATTGAAGGAGGAGAGAAATTATATCTTGAGTATGATTAAGAAGATCAAGGCCACTGGATGTAATGTGTTGTTAATTCAGAAGAGCATTTTGAGAGATGCAGTGACAGATTTATCAATGCATTACCTTGCGAAAGCTAAGATATTGGAAGATTTCTTTGGGGAGCTGCATAAGATGCTCTCAGAAATGCCTGAAGTAACAGAGATGCATCCAGTACCAGATGCTCATGTTCCTGTGTTGAGATTCAATTTCAGTGGTGTCTCCATTGATCTTCTCTATGCAAAACTATCACTTTGGGTTATTCCTGAAGACTTGGATATTTCGCAAGACTCGATACTCCAGAATGCTGATGAACAGACAGTTCGAAGTCTGAATGGATGTAGAGTTACAGACCAAATTCTGCGATTGGTTCCGAACATTCAGAATTTCCGGACAACATTGAGATGCATGAGGTTTTGGGCAAAACGACGAGGTGTTTATTCAAATGTTACGGGGTTCCTTGGTGGCATAAACTGGGCGCTTCTTGTTGCTCGAATCTGCCAACTTTATCCCAATGCATTGCCCAATATGCTAGTGTCTCGGTTCTTCAGAGTTTTCACTCAGTGGCGCTGGCCAAATCCAGTCATGCTTTGTGCTATTGAAGAAGGATCATTAGGCCTTCAAGTGTGGGATCCCAGGCGTAATCCAAAAGACAGGTTTCACATGATGCCTATAATTACTCCAGCTTATCCTTGTATGAACTCTAGCTATAATGTTTCATCAAGTACTCTGCGAATCATGCTAGAGGAGTTTCAGAGGGGCCATGACATTTGTGAGGCGATGGAGTTGAACATGGCTGATTGGGATACCCTTTTTGAGCGTTATGCCTTCTTTGAAGCTTATAAGAACTACTTGCAGATAGACATATGTGCAGAAAATGCAGATGATCTCAGACAATGGAAAGGTTGGGTAGAGTCTCGCCTCCGCCAGTTAACATTAAAGATTGAGAGGCATACTTTTAACATGCTTCAGTGTCATCCACATCCTGGCGATTTTACAGACAAGACTAGACCTTTCCATTGCAGTTACTTCATGGGTTTGCAAGGAAAACAAGGAGTTCATGGTAATGAAGGTGAACAATTTGATATACGATTAACAGTTGAAGATTTCAAGAATTCTGTCAACATATACACGTTCTGGAAACCAGGAATGGAGATCCGTGTAACTCATGTTAAAAGAAGAAACATACCAAACTTTGTATTTCCTGGAGGGGTTCGTCCTTCTCGTCCATCAAAAGTTACTTGGGATGTCAAGCGAAGTGCAGAAAACAAGTTTTCTGATGAGGGAAAGAAGCGGAAGTGGGTTGATGATGGTGAGAATTTTGGCTCAGCTAAAAAAAAGGAAACTTTGGTGTCTCATTCTACAGAGGAAGCTCAATCATTTGAGGCTAAAGAAGGTTCAGATGGAGCAGATGATAGAAAGAATCGAAAGCCTGCAAATGATAAAGGTCCGGGAAATGAAGACATGAAGATGGTGCCACATTCTGTGGAGGAAGTCCTGTCATATGAAGCTAAAGACACTTTAGATGTTACTGAAGGTAGAGAGAAGAGAAAACGAGTTGATGATGTAGATGATGGCTTGAAAAAAAATGCAACTTGA 2352 42.6 MDKMISTASGEVTITNDGATILNKMEVLHVSDHQPLPQPMWDIPTLQPAAKMLVELSKSQDAATGDGTTTVVLIAGALLKQCLVLLSHGIHPTVISDSLHKAAIKAVDVLTAMAVPVELSDRESLIKSASTSLNSKVVSQYSSLLAPLAVDSVLSVVNSEKPDLVNLRDIKIVKKLGGTIDDTELVKGLVFDKKVSHAAGGPTRMENAKIAVIQFQISPPKTDIEQSIVVSDYTQMDRILKEERNYILSMIKKIKATGCNVLLIQKSILRDAVTDLSMHYLAKAKILEDFFGELHKMLSEMPEVTEMHPVPDAHVPVLRFNFSGVSIDLLYAKLSLWVIPEDLDISQDSILQNADEQTVRSLNGCRVTDQILRLVPNIQNFRTTLRCMRFWAKRRGVYSNVTGFLGGINWALLVARICQLYPNALPNMLVSRFFRVFTQWRWPNPVMLCAIEEGSLGLQVWDPRRNPKDRFHMMPIITPAYPCMNSSYNVSSSTLRIMLEEFQRGHDICEAMELNMADWDTLFERYAFFEAYKNYLQIDICAENADDLRQWKGWVESRLRQLTLKIERHTFNMLQCHPHPGDFTDKTRPFHCSYFMGLQGKQGVHGNEGEQFDIRLTVEDFKNSVNIYTFWKPGMEIRVTHVKRRNIPNFVFPGGVRPSRPSKVTWDVKRSAENKFSDEGKKRKWVDDGENFGSAKKKETLVSHSTEEAQSFEAKEGSDGADDRKNRKPANDKGPGNEDMKMVPHSVEEVLSYEAKDTLDVTEGREKRKRVDDVDDGLKKNAT 783
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8954377 8963770 - Bma017227.1 Bma03g00902 79575

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00902 783 Pfam Poly(A) polymerase predicted RNA binding domain 586 659 IPR007010 GO:0003723|GO:0043631
Bma03g00902 783 Pfam Poly(A) polymerase predicted RNA binding domain 528 586 IPR007010 GO:0003723|GO:0043631
Bma03g00902 783 Pfam TCP-1/cpn60 chaperonin family 1 287 IPR002423 GO:0005524
Bma03g00902 783 Pfam Poly(A) polymerase central domain 253 525 IPR007012 GO:0004652|GO:0043631
Bma03g00902 783 SUPERFAMILY PAP/OAS1 substrate-binding domain 376 524 - -
Bma03g00902 783 Gene3D - 1 116 IPR027413 -
Bma03g00902 783 PANTHER POLY(A) POLYMERASE-LIKE PROTEIN 287 720 - -
Bma03g00902 783 Gene3D - 344 525 - -
Bma03g00902 783 PANTHER POLY A POLYMERASE 287 720 - -
Bma03g00902 783 SUPERFAMILY GroEL equatorial domain-like 1 117 IPR027413 -
Bma03g00902 783 SUPERFAMILY GroEL-intermediate domain like 121 188 IPR027410 -
Bma03g00902 783 Gene3D - 117 186 IPR027410 -
Bma03g00902 783 MobiDBLite consensus disorder prediction 696 783 - -
Bma03g00902 783 SUPERFAMILY Nucleotidyltransferase 287 374 IPR043519 -
Bma03g00902 783 SUPERFAMILY GroEL apical domain-like 182 287 IPR027409 -
Bma03g00902 783 ProSitePatterns Chaperonins TCP-1 signature 3. 60 68 IPR002194 GO:0005524|GO:0006457|GO:0016887|GO:0051082
Bma03g00902 783 MobiDBLite consensus disorder prediction 671 690 - -
Bma03g00902 783 SUPERFAMILY PAP/Archaeal CCA-adding enzyme, C-terminal domain 527 652 IPR011068 GO:0003723|GO:0016779|GO:0031123
Bma03g00902 783 Gene3D Poly(A) polymerase predicted RNA binding domain 527 642 - -
Bma03g00902 783 Gene3D GroEL 187 287 IPR027409 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00902 K14376 PAP; poly(A) polymerase [EC:2.7.7.19] - qsu:111986255 751.51
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00902 Bma-Chr3:8954377 Bma15g00232 Bma-Chr15:2331081 5.64E-45 dispersed
Bma02g00079 Bma-Chr2:671329 Bma03g00902 Bma-Chr3:8954377 0 transposed
Bma03g00902 Bma-Chr3:8954377 Bma06g00054 Bma-Chr6:881019 3.83E-168 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g270 Blo04g00834 . . . . . . . Cmo13g01043 . . . . . . Cpe20g00138 . . . . . . . . . . . . . . . . . . . Lsi02g00215 Csa01g00698 Chy12g01415 Cme12g01849 . . . . . Bpe15g00533 Bma03g00902 . . . . Cma13g01005 . Car13g00840 Car18g00050 Cpe09g01126 . Bhi08g01267 Tan05g2221 . Lac10g0269 Hepe07g2369 . . Cla04g01067 Cam04g1110 Cec01g1624 Cco01g1671 Clacu04g1136 Cmu04g1119 Cre01g1420 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003713 1 3 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 5 4 4 46
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma03g00902 Bma_Chr03 FPKM 19.129511 19.862083 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0