Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00908 ATGGCGGACGGGCTTGTTCTTCGTGGTACAATGAGGGCTCACACCGATATGGTGACTGCAATTGCTACTCCGATCGACAACGTCGATATGATTGTTACCTCTTCCCGTGACAAATCGATCATCGTTTGGAATCTAACCAGGAGCGAGAAGACCTACGGTGTGCCGCGCCGTCGTTTAACTGGACATTCTCACTTCGTCGAGGACGTCGTTCTCTCGTCCGATGGTCAATTCGCTCTCTCTGGCTCGTGGGACGGGGAGCTCCGCCTCTGGGACCTTGCTGCCGGTGTTTCTGCTCGGAGGTTCGTTGGACACACTAAAGACGTCCTCTCTGTTGCATTCTCTTATGACAACCGTCAGATCGTTTCGGCCTCTAGGGACCGTACGATCAAGCTGTGGAATACTTTGGGTGAGTGCAAGTATACTATTCAGGAGGGAGATGCTCATTCGGATTGGGTCAGTTGTGTTAGGTTCAGTCCTAATACCAACCAACCAACTATTGTTTCTGCCTCGTGGGATAAGACCGTGAAGGTGTGGAACCTGTCCAACTGCAAGTTGAGGAGCACTTTAGCTGGTCACGGTGGCTATGTGAACACAGTTGCTGTGTCGCCAGATGGGTCGCTGTGCGCAAGTGGAGGGAAAGACGGAATGATTCTTCTGTGGGATTTGGCGGAGGGGAAAAGACTGTACTCGTTAGATGCGGGTTCTATTATTCATGCACTGTGTTTCAGTCCCAATAGGTATTGGCTTTGCGCTGCAACTGAGAACAGCATAAAGATCTGGGATTTGGAGAGCAAGAGCATTGTTGAGGATTTGAAAGTTGATCTCAAGGCTGAAGCAGAGAAAACTGATGACACGCATGCTGCGACTGCCAACAAGAGGAAGGTCATCTACTGCACAAGCTTGAGCTGGAGCGCTGATGGTAGCACATTGTTTAGTGGTTACACTGATGGTGTCATCAGAGTCTGGGGCATTGGCCGACTATAG 984 50.51 MADGLVLRGTMRAHTDMVTAIATPIDNVDMIVTSSRDKSIIVWNLTRSEKTYGVPRRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSARRFVGHTKDVLSVAFSYDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHSDWVSCVRFSPNTNQPTIVSASWDKTVKVWNLSNCKLRSTLAGHGGYVNTVAVSPDGSLCASGGKDGMILLWDLAEGKRLYSLDAGSIIHALCFSPNRYWLCAATENSIKIWDLESKSIVEDLKVDLKAEAEKTDDTHAATANKRKVIYCTSLSWSADGSTLFSGYTDGVIRVWGIGRL 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9039956 9041939 + Bma030998 Bma03g00908 79581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00908 327 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 189 226 - -
Bma03g00908 327 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 59 92 - -
Bma03g00908 327 SUPERFAMILY WD40 repeat-like 5 322 IPR036322 GO:0005515
Bma03g00908 327 CDD WD40 7 322 - -
Bma03g00908 327 ProSitePatterns Trp-Asp (WD) repeats signature. 78 92 IPR019775 -
Bma03g00908 327 Gene3D - 4 327 IPR015943 GO:0005515
Bma03g00908 327 PRINTS G protein beta WD-40 repeat signature 166 180 IPR020472 -
Bma03g00908 327 PRINTS G protein beta WD-40 repeat signature 120 134 IPR020472 -
Bma03g00908 327 PRINTS G protein beta WD-40 repeat signature 208 222 IPR020472 -
Bma03g00908 327 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 101 133 - -
Bma03g00908 327 PANTHER RECEPTOR FOR ACTIVATED PROTEIN KINASE C RACK1 1 326 IPR045223 GO:0015935|GO:0043022
Bma03g00908 327 ProSiteProfiles Trp-Asp (WD) repeats profile. 101 133 IPR001680 GO:0005515
Bma03g00908 327 ProSitePatterns Trp-Asp (WD) repeats signature. 31 45 IPR019775 -
Bma03g00908 327 ProSitePatterns Trp-Asp (WD) repeats signature. 166 180 IPR019775 -
Bma03g00908 327 ProSiteProfiles Trp-Asp (WD) repeats profile. 145 188 IPR001680 GO:0005515
Bma03g00908 327 ProSiteProfiles Trp-Asp (WD) repeats profile. 11 53 IPR001680 GO:0005515
Bma03g00908 327 Pfam WD domain, G-beta repeat 235 261 IPR001680 GO:0005515
Bma03g00908 327 Pfam WD domain, G-beta repeat 186 221 IPR001680 GO:0005515
Bma03g00908 327 Pfam WD domain, G-beta repeat 55 91 IPR001680 GO:0005515
Bma03g00908 327 Pfam WD domain, G-beta repeat 9 44 IPR001680 GO:0005515
Bma03g00908 327 Pfam WD domain, G-beta repeat 99 133 IPR001680 GO:0005515
Bma03g00908 327 Pfam WD domain, G-beta repeat 144 179 IPR001680 GO:0005515
Bma03g00908 327 Pfam WD domain, G-beta repeat 296 322 IPR001680 GO:0005515
Bma03g00908 327 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 11 45 - -
Bma03g00908 327 ProSitePatterns Trp-Asp (WD) repeats signature. 208 222 IPR019775 -
Bma03g00908 327 PANTHER BNAA06G12310D PROTEIN 1 326 - -
Bma03g00908 327 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 145 182 - -
Bma03g00908 327 ProSiteProfiles Trp-Asp (WD) repeats profile. 299 327 IPR001680 GO:0005515
Bma03g00908 327 SMART WD40_4 182 221 IPR001680 GO:0005515
Bma03g00908 327 SMART WD40_4 289 323 IPR001680 GO:0005515
Bma03g00908 327 SMART WD40_4 4 44 IPR001680 GO:0005515
Bma03g00908 327 SMART WD40_4 52 91 IPR001680 GO:0005515
Bma03g00908 327 SMART WD40_4 94 133 IPR001680 GO:0005515
Bma03g00908 327 SMART WD40_4 224 261 IPR001680 GO:0005515
Bma03g00908 327 SMART WD40_4 135 179 IPR001680 GO:0005515
Bma03g00908 327 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 291 327 - -
Bma03g00908 327 ProSiteProfiles Trp-Asp (WD) repeats profile. 59 100 IPR001680 GO:0005515
Bma03g00908 327 ProSiteProfiles Trp-Asp (WD) repeats profile. 189 230 IPR001680 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma03g00908 Bma06g00058 CCT
Bma03g00908 Bma08g00007 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00908 Bma-Chr3:9039956 Bma15g00603 Bma-Chr15:7614787 3.96E-18 dispersed
Bma03g00908 Bma-Chr3:9039956 Bma03g00912 Bma-Chr3:9158800 0 proximal
Bma01g01530 Bma-Chr1:33103719 Bma03g00908 Bma-Chr3:9039956 1.30E-17 transposed
Bma03g00908 Bma-Chr3:9039956 Bma06g00058 Bma-Chr6:913347 5.03E-11 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00908 K14753 - zju:107418716 623.239