Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00927 ATGAGTTCTCAAGTCCGAAATGAACGGAGGGATAGATCAAAATTTCCTGCGCCACATTCTCTTCAAGAATGGGTTCCGAGAGGATCAATGCCACATTCTCTTCAAGAGTGGGTTCCGAGAGGATCAATGACTGCAGCCAGAAACCAAACATCGAATCTCAACTCAAACTTCAATGGAAATGGTCGAGAGTCAAATCATAACATTGATTCTTCTGTTAGTCGACATGGGGGGAATCACAGAGGAAGAAGAGCTCATGAGGGTCGACCTACATATCAAAGGATGGCGCAGAGCAGAGAGAAAGAGACTGATGACAATTCTAGGAAGAAGATGTTCAAGGAGGCTAATGTACCAATGATTGTTCAAGAAATTCAAGAGAAGCTGGTTAAGAGCACGGTTGAGTGCATGATTTGTTATGAATTGGTGCGGAGATCAGCACCGATATGGTCTTGTTCCGGCTGTTGTTCCATATTTCATTTAAATTGTATCAGGAAATGGGCCCAGGCTCCTACATCTGTTGATTTGTTAACAGAAAAAAATCAGGGTCTTAATTGGCGGTGTCCTGGGTGCCAATCTGTGCAACTAACATTGTCAAGGGAGATACAATACGTTTGCTTCTGTGGAAAGAGGCCAGACCCTCCTTCTGATTTGTATTTGACGCCACATTCATGTGGTGAACACTGTGGCAAAACACTTGAGAGGGAGATTACCGGTGCTAAAGGAAGTAAGGAGGATCTCTGCCCTCATGTTTGTGTATTGCAGTGCCACCCTGGTCCATGCCCTCCTTGTAAGGCATTTGCCCCACCTCGATCGTGCCCTTGTGGGAAAAAAAAAATTACAACACGATGCTCAGAGAGGAAGTCTGATCTTACTTGTGGTCAGCGCTGTAATAAACTTCTCAACTGCTTTCGTCATCGGTGTGAAAAAATATGCCATACTGGTCCTTGTGATTCCTGTCAGCTTTTGGTCAATGCCTCTTGTTTCTGCAAGAAAAAGACGGGGGTTTTTCTTTGTGGAGATATGGCTGTCAAAGGTGAAGTGAATGCAACTGATGGTGTATTTTCATGTGATTCTACATGTGGAAGGATAATAAGTTGTGGTAATCATTTATGTGGTGCAATTTGTCATCCTGGTTCCTGCTCGGAGTGTGACTTTATGCCTGAAAAAATCAAGACATGCTGTTGCGGAAAAACAAGCTTGCGGGAAGAGTGGACGAGTTGTTTGGATCCAATTCCAACCTGTTCAGAACTCTGTGGAAAGTTACTACCTTGTGGGTTACATCACTGTAACGAGATGTGTCATATAGGAGACTGTTCTCCCTGTTTGGTCCAAGTTTTGCAAAAATGCTTCAGTGATTTGACTTGTGCGTGCGGGAGGACTGCTCTTCCTCCCCCCTTACCATGTGGTACACCTAGACCTTCATGTCAACTTCCATGTTCAGTTCCCCAGCCTTGTGGGCACTTGTCTTCACACAGCTGCCACTTTGGAGACTGTCCCCCTTGTGCTGTTCCTATAGCAAAGGAGTGCATTGGCGGACATGTTGTACTAAGAAATATACCTTGTGGTTCACGGGATATCAGATGTAACAAGCTCTGTGGGAAAACAAGAAAGTGTGGCGTGCATGCTTGTGGCAGAACGTGTCACTGGCCACCTTATCACACATTATCTGGATCTGGATCTGAATCTGGATCTAACTCATGTCAGAAAGTTTCGTGTGGGCAGACCTGTGGTGCTCCTAGGAAAGATTGCAGACACACTTGTTGTGCGCCTTGTCATCCTCATTCTCCATGCCCTGATACAAGATGTAATGTCTCTGTTACAATTACGTGTTCTTGTAACAGAATAACGGAAACTGTTCCTTGTGGTGTTGGGTGCAGCTGTATTGGTTTTAATTCTGACACAGTGCTTGAAGCTTCTATTATTCAGAAGTTGCCAGTTCCGCTTCAACTCGTCGAAGGAAATGGCAGGCAGATTCCATTGGGTCTCAGGAAGCTTATGTGTGATGATGAATGTGCTAAGTTGGAGCGGAAACGCGCACTTTCGTCAGCAGATGCTAATGAAGCTGTGTGGAAGAAAGAAGCTCCAATTTCTGCGTCTATGAATCGGTGGCTTGTCCTTGAACCTGAAGCAGCTTTAAGTTCATCATCTGCATCCGTTGAAGTTGAGAATCCCAGAAAAGAAGCCGCTGATCTTTCTGTTTCTCAGTTTGGAGTTAGATGTTAG 2220 44.82 MSSQVRNERRDRSKFPAPHSLQEWVPRGSMPHSLQEWVPRGSMTAARNQTSNLNSNFNGNGRESNHNIDSSVSRHGGNHRGRRAHEGRPTYQRMAQSREKETDDNSRKKMFKEANVPMIVQEIQEKLVKSTVECMICYELVRRSAPIWSCSGCCSIFHLNCIRKWAQAPTSVDLLTEKNQGLNWRCPGCQSVQLTLSREIQYVCFCGKRPDPPSDLYLTPHSCGEHCGKTLEREITGAKGSKEDLCPHVCVLQCHPGPCPPCKAFAPPRSCPCGKKKITTRCSERKSDLTCGQRCNKLLNCFRHRCEKICHTGPCDSCQLLVNASCFCKKKTGVFLCGDMAVKGEVNATDGVFSCDSTCGRIISCGNHLCGAICHPGSCSECDFMPEKIKTCCCGKTSLREEWTSCLDPIPTCSELCGKLLPCGLHHCNEMCHIGDCSPCLVQVLQKCFSDLTCACGRTALPPPLPCGTPRPSCQLPCSVPQPCGHLSSHSCHFGDCPPCAVPIAKECIGGHVVLRNIPCGSRDIRCNKLCGKTRKCGVHACGRTCHWPPYHTLSGSGSESGSNSCQKVSCGQTCGAPRKDCRHTCCAPCHPHSPCPDTRCNVSVTITCSCNRITETVPCGVGCSCIGFNSDTVLEASIIQKLPVPLQLVEGNGRQIPLGLRKLMCDDECAKLERKRALSSADANEAVWKKEAPISASMNRWLVLEPEAALSSSSASVEVENPRKEAADLSVSQFGVRC 739
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9612912 9616106 - Bma017252.1 Bma03g00927 79600

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00927 739 CDD NF-X1-zinc-finger 413 469 - -
Bma03g00927 739 PANTHER NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 89 448 IPR034078 GO:0003700
Bma03g00927 739 PANTHER NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 445 682 IPR034078 GO:0003700
Bma03g00927 739 CDD NF-X1-zinc-finger 291 339 - -
Bma03g00927 739 PANTHER NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 680 732 IPR034078 GO:0003700
Bma03g00927 739 CDD NF-X1-zinc-finger 355 400 - -
Bma03g00927 739 SMART znfxneu3 423 442 IPR000967 GO:0005634|GO:0008270
Bma03g00927 739 SMART znfxneu3 365 384 IPR000967 GO:0005634|GO:0008270
Bma03g00927 739 SMART znfxneu3 484 502 IPR000967 GO:0005634|GO:0008270
Bma03g00927 739 SMART znfxneu3 246 264 IPR000967 GO:0005634|GO:0008270
Bma03g00927 739 SMART znfxneu3 582 603 IPR000967 GO:0005634|GO:0008270
Bma03g00927 739 SMART znfxneu3 301 320 IPR000967 GO:0005634|GO:0008270
Bma03g00927 739 SMART znfxneu3 537 573 IPR000967 GO:0005634|GO:0008270
Bma03g00927 739 PANTHER NF-X1-TYPE ZINC FINGER PROTEIN NFXL1 89 448 - -
Bma03g00927 739 PANTHER NF-X1-TYPE ZINC FINGER PROTEIN NFXL1 445 682 - -
Bma03g00927 739 MobiDBLite consensus disorder prediction 1 28 - -
Bma03g00927 739 ProSiteProfiles Zinc finger RING-type profile. 134 190 IPR001841 -
Bma03g00927 739 CDD RING-CH-C4HC3_NFX1 133 190 - -
Bma03g00927 739 MobiDBLite consensus disorder prediction 83 107 - -
Bma03g00927 739 SUPERFAMILY RING/U-box 121 194 - -
Bma03g00927 739 MobiDBLite consensus disorder prediction 49 74 - -
Bma03g00927 739 ProSiteProfiles Zinc finger PHD-type profile. 131 192 IPR019787 -
Bma03g00927 739 PANTHER NF-X1-TYPE ZINC FINGER PROTEIN NFXL1 680 732 - -
Bma03g00927 739 MobiDBLite consensus disorder prediction 1 17 - -
Bma03g00927 739 MobiDBLite consensus disorder prediction 49 107 - -
Bma03g00927 739 Pfam NF-X1 type zinc finger 365 382 IPR000967 GO:0005634|GO:0008270
Bma03g00927 739 Pfam NF-X1 type zinc finger 490 500 IPR000967 GO:0005634|GO:0008270
Bma03g00927 739 Pfam NF-X1 type zinc finger 537 547 IPR000967 GO:0005634|GO:0008270
Bma03g00927 739 Pfam NF-X1 type zinc finger 248 263 IPR000967 GO:0005634|GO:0008270
Bma03g00927 739 Pfam NF-X1 type zinc finger 303 319 IPR000967 GO:0005634|GO:0008270
Bma03g00927 739 Pfam NF-X1 type zinc finger 423 440 IPR000967 GO:0005634|GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00927 K12236 NFX1; transcriptional repressor NF-X1 - cpap:110823365 933.324
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma03g00927 Bma06g00071 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00175 Bma-Chr3:1341601 Bma03g00927 Bma-Chr3:9612912 5.83E-07 dispersed
Bma03g00927 Bma-Chr3:9612912 Bma06g00071 Bma-Chr6:1100891 9.84E-11 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g162 Blo04g00860 . . . . . Bma06g00071 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g00250 . . . . . . . . . Bma03g00927 . . . . . . . . . . Bhi08g01330 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011037 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57044 PF01422 zf-NF-X1 0.0027 No_clan Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma03g00927 Bma_Chr03 FPKM 5.862724 5.767594 8.850908 9.573823 8.376466 8.525285 9.387135 11.705669 12.803246 11.682766