Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00929 ATGGATCTAAGTATAGCAACATGGTGTTTTCCCAGTGAAATCTACAAGAGACTGGGTTTAATAGCCAGTGCAATCTCAACTAATGGAAAATTTTCATGTTCTCACTTTGCAGATCTGGAAACCCCTCGAAATAGTCTGAAGCTGCAGAGAGATACTTCCCAGAGTTGTTATGCAGTTGGAGAAGTCCAATACTCCTATCAAGCGGAAGAAGAGCATTCGAACCAGGATTGTTATCCAGATAATGCTTCAATGAAGAAGTTGATTGACAAGGAAATGTCCAAACATTCAAATACCAGAAAAAATGGACCGAACATTGTAGCTCGTCTGATGGGAATGGAGATATTGCCATCAGATATGAAACCGGAAACTCAGTTGAGAGAGAAACAAAAGGAAGGTAATTTTTTAACCAAAGAAAGGATTGAAAGGTGCTCAGATGGTCCTATACTTTCCCACTCGAATTCGTCAATGCATATGGAACTCCTTTCATCATCTAACCATAATTGGGACAGAGAATCCTATCAGTGGAATAAAAACCATAAGATTGGAAATCCAAGACGTCGAGAACATCCTCAAGAAGAGGAACTTCAGAAATTCAAGAAGGAATTTGAAGCATATCAGGCAGAAAGAATTAGGGAATGTTCTAGGGTTCTTGAACTTGGTAGTGATAACAGACAGTTACTTGCTCAGGAAGACCTCGACAAGGTAAAGATGGCAGTCACTACAAAATCCAGGAGACTGGCGAGTCAGAAACCATTAGAACCGAAGAATTCCATACTGCAAGTAAGGTCATTTGGACAATCTGATTTGCAAGTTCATGGTAATAAGATGGATTTGTCCCCATTTGAAAAAAAGAAAAGTTATTTTATGAGAAATAAGTCTAACCATGAAGATACTGATCGGCCGTTCTTGACGAGTTTTGATCAAAAAACGATATCCTCATCTCCCTCAAGGATAGTTATCTTGAAGCCTGGTCCTGATCGGATATGCCATCTCAAAGAAATTTGTGTTAGTTCATCAGGGAATTTAGGTGAAAGAAATAATATACAAGACTTTCTCGAGGAGGTGAAGGAGCAGCTGAAGCGGGAATTGCATGGAAAAACAAATCAAAAGGTTTCTGGAATCCGAGGTGGTGGAATTGAGACCCCTTACAGTGAAAAGCCATTTGTTCCAAAGCATAGTGCTAAAGATTTAGCAAAACATGCTAGAGAACATGTGAATCAGGAGATTGGCATAAATTTAATCCAATCTGAATCTACTAGGTCATGGAGAAGTGGCATTCGGTTAAATGGACTAGATTCCCCTGAGTTTTTAAAGAGAAATACTAGGAGCCTTTTTGAGAACCTTAGATTGGCTGTTTCAGATGATGAAACTTTAGTAAAGGAAGTTGAAGATACTGGGAGAGGTGGACGAGAGACAAGCTACATGGAAATTGAAAGACAGGAAGAAGAAATGCAAACAAGATCTCTCAGACACAGAGAATTGTCCCCTAGGAACCTCGTTAGGTCATTTTCGGCACCAGTATCAGGATCGTCCTTTGGCAAACTTCTACTGGAGGATAGGAACATTTTAACTGGTGCTCACATCCGGAGGAAGCATGAAGCTAAAGAAAATGTGTTGATAAATATGAAAATCCCAATGAAAGAAAAATTTAATCTCAAAGAAAAAGTTTCGAGTTTTAGATATAGTTTCAATCTCAGAAGGAAATTATTTGGCCGAAAGACGCAGTCAATGGTGGAATCATTGAAGACTGAAGTCAATCCTGTGAAGGACATTATGAGTGGACCAACTGTTCTTATGAACTTTAGGGAGAGGCAGACAAGGGAGAACTCCACTGAGGTGCCCCCTAGTCCTGCTTCTGTGTGTAGTAGTATTGCTGATGATCTCTGGGATCTCGCCAATCCTATTAGCCCAATTTCAACATCAGAGCTTTCTCCTGGAGATGATATTGTTGTGTCTCAAGTATTTCGAGAGATCAACTCTAATTTAAGTGAGCTACGAAGACAACTGCATAATCTCGCTTCCGATGAATTCGATGACAGAATAGAACATCCGCCCGTTGAATCTGAAACCGCCAAGCTAGATGATCATGCAGAAGCTTACGTAAAAGAACTTCTCATTGCTTCTGGTTTATATGATGGGTTGGCCGATAAATTCTTATCTAGATGGGACATGTTTCCGAAGCCCATTAGCAACTGTGTCTTTGAAGAAGTTGAACAAACTTACAGAAATTCGGTCAAGGAGCATAAAAACTATTTGAAGGACCAGAATGAGTTGGTAGATCACAAGTTATTACTTGATCTTTCAAATGAAGCACTGTCAACTATTCTTGGACCCCCTTTTAAAATTTCAAGTTGTAGAGAATTCAGTAATATGCCGAAGGCGCCACCACTTTCCGGTCAGAAACTATTGGATTCAGTGTGGGAAGTCATACATGTGTACATATACCCTCCGAACAACAGGTCGTCTTACTACTCACTCGACGCCATGGTCAGTCGGGATGTAAATTCGACTTGTTGGCCTGCACTGGTGAATGATGAGTTTAACACTATGGGAAGAGATATAGAATGTTTAATCACGCGGGATCTGGTTGAGGAATTAGTGAAGGACATCCAGGTATGA 2619 40.17 MDLSIATWCFPSEIYKRLGLIASAISTNGKFSCSHFADLETPRNSLKLQRDTSQSCYAVGEVQYSYQAEEEHSNQDCYPDNASMKKLIDKEMSKHSNTRKNGPNIVARLMGMEILPSDMKPETQLREKQKEGNFLTKERIERCSDGPILSHSNSSMHMELLSSSNHNWDRESYQWNKNHKIGNPRRREHPQEEELQKFKKEFEAYQAERIRECSRVLELGSDNRQLLAQEDLDKVKMAVTTKSRRLASQKPLEPKNSILQVRSFGQSDLQVHGNKMDLSPFEKKKSYFMRNKSNHEDTDRPFLTSFDQKTISSSPSRIVILKPGPDRICHLKEICVSSSGNLGERNNIQDFLEEVKEQLKRELHGKTNQKVSGIRGGGIETPYSEKPFVPKHSAKDLAKHAREHVNQEIGINLIQSESTRSWRSGIRLNGLDSPEFLKRNTRSLFENLRLAVSDDETLVKEVEDTGRGGRETSYMEIERQEEEMQTRSLRHRELSPRNLVRSFSAPVSGSSFGKLLLEDRNILTGAHIRRKHEAKENVLINMKIPMKEKFNLKEKVSSFRYSFNLRRKLFGRKTQSMVESLKTEVNPVKDIMSGPTVLMNFRERQTRENSTEVPPSPASVCSSIADDLWDLANPISPISTSELSPGDDIVVSQVFREINSNLSELRRQLHNLASDEFDDRIEHPPVESETAKLDDHAEAYVKELLIASGLYDGLADKFLSRWDMFPKPISNCVFEEVEQTYRNSVKEHKNYLKDQNELVDHKLLLDLSNEALSTILGPPFKISSCREFSNMPKAPPLSGQKLLDSVWEVIHVYIYPPNNRSSYYSLDAMVSRDVNSTCWPALVNDEFNTMGRDIECLITRDLVEELVKDIQV 872
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9648699 9652638 + Bma017255.1 Bma03g00929 79602

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00929 872 PANTHER RB1-INDUCIBLE COILED-COIL PROTEIN 34 871 - -
Bma03g00929 872 Coils Coil 349 369 - -
Bma03g00929 872 Coils Coil 655 675 - -
Bma03g00929 872 PANTHER RB1-INDUCIBLE COILED-COIL PROTEIN 34 871 - -
Bma03g00929 872 MobiDBLite consensus disorder prediction 369 389 - -
Bma03g00929 872 Pfam Domain of unknown function (DUF4378) 699 865 IPR025486 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00929 - - - qsu:112005480 824.313
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma11g00117 Bma-Chr11:1128648 Bma03g00929 Bma-Chr3:9648699 9.29E-06 dispersed
Bma03g00929 Bma-Chr3:9648699 Bma06g00075 Bma-Chr6:1177395 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1198 Blo04g00861 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0900 Cone12ag0871 . . . . . . . . Bda11g01810 . . . Bma03g00929 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008231 2 4 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 0 1 1 1 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma03g00929 Bma_Chr03 FPKM 13.118531 13.4311 10.198771 11.954524 25.607201 24.055311 23.80405 10.479424 9.840321 8.369786