Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00931 GGATTTTCGACAAATTTTACCCAAAGTGTAGCAGTTTCTGGGACGAGCAGCAGCGCCGGAATAAGCCAATTCTCTGATGCGCTGAGCATAAATATTAAAGACCCTAATTCGAATCGGCAAATCTTGTTCCCTTCCAACTTGAAGGTCTTCACCCTTTCTGAGCTTAAAGCTGCGACTAAGGACTTCAAAGCCAGTACGTTTCTCGGCCAGGGAGGCTTTGGGAAAGTTTACAAGGGCTGGGTAGACGAAAAAACACTTGCTCCTTCAAAGTCAGGTAATGCGATGGTGGTTGCCATCAAGAAATTAAACTCAGAAAGCGTGCAAGGTTTTCGAGAGTGGCAGGCGGAAGTGAACTTTCTAGGAAGTCTCTCTCACCCAAACCTCGTAAAGTTATTGGGATACTGCAGGGAGGATGCAGAGCTTCTTCTTGTTTATGAGTTCATGCAAAAGGGTAGCTTGGAGAATCATCTCTTTAGAAGGAATCCTTCCATCGAACCACTTTCGTGGGAAAACCGGATTAAGATCGCAATTGGGGCAGCCAAGGGGTTGGCTTTTTTGCATAATTCAGAAAAACAAATTATATACAGAGATTTTAAGGCTTCTAATATACTTCTCGACCTGAACTACAATGCTAAAATCTCAGATTTTGGGTTGGCCAAATTGGGGCCTTCAGGAGAAGCAACGCACGTGACGACCCGAATAATGGGGACGCAAGGCTACTTTGCTCCAGAATACGTCTCCACAGCAGGGCATTTGTACGTGAAGAGCGACGTCTACGGATTCGGCGTCGTGTTGCTCGAATTGATGACTGGATTACGAGCCTTGGATTCAGGGAGGCCGAGCGAGCAGCGTAATCTGGTGAATTGGCTTAGTCCAGTGTTGATCGAAAGAAAGAAGATCAAAACCATTATGGATAAGAGGATAGAAGGTCAGTATTCCTCCAAGGCCTTATCACGGGCCGCAGACCTTACTGTAAAATGTCTCGCATCCGATCCTAGAAATCGCCCCTCCATGGAAGAAGTGGTTGAAGCTTTGGAACAGATCGAGATAAAGAAAAGACCTAAATCGAAGAAGGCGGCCAAACTCATCACTGCGGCAAAGGTCTAA 1107 45.98 GFSTNFTQSVAVSGTSSSAGISQFSDALSINIKDPNSNRQILFPSNLKVFTLSELKAATKDFKASTFLGQGGFGKVYKGWVDEKTLAPSKSGNAMVVAIKKLNSESVQGFREWQAEVNFLGSLSHPNLVKLLGYCREDAELLLVYEFMQKGSLENHLFRRNPSIEPLSWENRIKIAIGAAKGLAFLHNSEKQIIYRDFKASNILLDLNYNAKISDFGLAKLGPSGEATHVTTRIMGTQGYFAPEYVSTAGHLYVKSDVYGFGVVLLELMTGLRALDSGRPSEQRNLVNWLSPVLIERKKIKTIMDKRIEGQYSSKALSRAADLTVKCLASDPRNRPSMEEVVEALEQIEIKKRPKSKKAAKLITAAKV 368
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9723545 9725459 + Bma017258.1 Bma03g00931 79604

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00931 368 ProSiteProfiles Protein kinase domain profile. 62 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma03g00931 368 Pfam Protein tyrosine and serine/threonine kinase 65 345 IPR001245 GO:0004672|GO:0006468
Bma03g00931 368 PANTHER OS01G0588500 PROTEIN-RELATED 19 357 - -
Bma03g00931 368 ProSitePatterns Protein kinases ATP-binding region signature. 68 101 IPR017441 GO:0005524
Bma03g00931 368 ProSitePatterns Serine/Threonine protein kinases active-site signature. 193 205 IPR008271 GO:0004672|GO:0006468
Bma03g00931 368 SUPERFAMILY Protein kinase-like (PK-like) 37 348 IPR011009 -
Bma03g00931 368 Gene3D Transferase(Phosphotransferase) domain 1 148 367 - -
Bma03g00931 368 Gene3D Phosphorylase Kinase; domain 1 46 147 - -
Bma03g00931 368 PANTHER SERINE/THREONINE-PROTEIN KINASE PIX13-RELATED 19 357 - -
Bma03g00931 368 CDD STKc_IRAK 68 348 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00931 - - - pvy:116127793 501.901
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma03g00931 Bma06g00077 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00931 Bma-Chr3:9723545 Bma06g00077 Bma-Chr6:1192143 0 dispersed
Bma03g00931 Bma-Chr3:9723545 Bma03g00130 Bma-Chr3:1002493 3.47E-141 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1189 Blo04g00863 . . . Bpe15g00497 Bpe13g00391 . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0892 . Cone6ag1697 Cone9ag1621 . . . . . . . . . . Bma03g00931 Bma06g00077 . . . Cma16g01278 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003844 1 1 1 2 2 0 2 0 0 2 1 0 2 2 0 2 0 0 2 0 2 0 0 0 0 1 0 0 0 1 24
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66409 PF07714 PK_Tyr_Ser-Thr 2.20E-47 CL0016 Bma PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma03g00931 Bma_Chr03 FPKM 17.825207 15.190839 18.318438 23.525684 43.801399 35.265537 30.154388 7.737149 10.639476 6.955955