Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00933 ATGCCCGACCCAAGCAGGAGATCCTCGCCATGGCGCTCCAACTTCCTGCTCTTTTCTTTGCTGGGTCCCATACCCATTTCACTCGCTTTCCTCATCTACCGACTCGACTCGTTCAACCCGGCTCCTCTTCCTCCTCACGGGTTGACTAGGGAGGTTGTGGCTGTTCCTTCCGCCAACAGCCGCATGCTTCGAGTGTCTGAGTTCTTGGGTGAGGGTCAGTTGTTGGCGCCGGAAGATATTGCTTATGACGCGGAGTCTGGACTCATTTACACTGGATGCTCCGATGGGTGGATCAAGCGAGTCACTCTGAATGACTCTGTTTCTGACTCGGTTGTCGTTAATTGGGTCTACACCGGTGGGAGGCCACTCGGAGTTGCAACTGGACGTGACGGACAAGTTATCGTTGCCGATTCGTATAAGGGACTGCTGAGGTTGAATAAAGACGGAACATTGGAGCTATTGACAGACGAAGCCGAGGGTCTGAAATTCAAGTTGACAGATGGCGTAGATGTGGCTGAAGACGGCATGATTTATTTCACAGACGCCTCTTATAAATACAGCTTCAAAGAGTACGTATATGACATCTTGGAAGGTAATCCAAACGGCAGATTAATGAGCTATGATCCAGTAACTAAACAGACCAGAGTGTTGCTTCGAGATCTCTACTTTGCCAATGGAGTGGCCGTCTCTCCCGATCAAACTTACGTCATCTACTGTGAAACCCCCATAAGAAGTTGCGGAAAATATTACATAAAAGGCGATAGAAAAGGAAGTGTTGAGAAATTTGTCGAGTCCCTGCCCGGACTGCCTGACAACATCCGATACGACGGAGACGGCCATTACTGGATTGCCTTGTCCATGGAGGCTTCAGCGTCGTGGTTTCTGATGTTAGAGTACCCTGCAATAAGGAAGGTGATGGCGATGGTGCAGAGGTACATCGGGAAGATCCCGCAAATAGATAAGAACGGAGGGGCCTTAGCGGTGAATTTGAAAGGAGAAATGGTGGCCCACTATTACGATCCAAGTCTGTCATTGATATCCAGCGCAGTGAGGATCGGAAACCACTTGTACTGCGGCTCCATCGTGTATCCCTATATCATCCGCCTCGACCTCCATAAACAGCCTACCCTTATTGGTTCTTCGACTCAGTGA 1152 49.65 MPDPSRRSSPWRSNFLLFSLLGPIPISLAFLIYRLDSFNPAPLPPHGLTREVVAVPSANSRMLRVSEFLGEGQLLAPEDIAYDAESGLIYTGCSDGWIKRVTLNDSVSDSVVVNWVYTGGRPLGVATGRDGQVIVADSYKGLLRLNKDGTLELLTDEAEGLKFKLTDGVDVAEDGMIYFTDASYKYSFKEYVYDILEGNPNGRLMSYDPVTKQTRVLLRDLYFANGVAVSPDQTYVIYCETPIRSCGKYYIKGDRKGSVEKFVESLPGLPDNIRYDGDGHYWIALSMEASASWFLMLEYPAIRKVMAMVQRYIGKIPQIDKNGGALAVNLKGEMVAHYYDPSLSLISSAVRIGNHLYCGSIVYPYIIRLDLHKQPTLIGSSTQ 383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9809391 9878964 - Bma031007 Bma03g00933 79606

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00933 383 SUPERFAMILY Calcium-dependent phosphotriesterase 66 373 - -
Bma03g00933 383 Gene3D - 58 380 IPR011042 -
Bma03g00933 383 PANTHER PROTEIN STRICTOSIDINE SYNTHASE-LIKE 5-LIKE 20 375 - -
Bma03g00933 383 Pfam Strictosidine synthase-like, N-terminal 63 101 - -
Bma03g00933 383 Pfam Strictosidine synthase 167 253 IPR018119 GO:0009058|GO:0016844
Bma03g00933 383 PANTHER STRICTOSIDINE SYNTHASE-RELATED 20 375 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00933 - - - fve:101304032 495.738
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00933 Bma-Chr3:9809391 Bma06g00902 Bma-Chr6:44071949 2.14E-61 dispersed
Bma03g00933 Bma-Chr3:9809391 Bma14g00375 Bma-Chr14:4513183 1.51E-46 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1173 Blo04g00867 . . . Bpe15g00494 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma03g00933 . . . . . . . . . . . . . . . . . . . . . . . . Lsi07g01068 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005821 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 10 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma03g00933 Bma_Chr03 FPKM 3.85822 4.770506 0.13906 0.130819 2.031439 3.857003 2.427909 0.053853 0.045639 0.08219