Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00940 ATGAACTTGTATCTGAGATCGATTATTCTTTCTGTGCATGGCTTGCAGAATGCGTTTCAGTCGATGTCAAGGCCACAGCTGGAGCAAGCGGTCGTAGGCCTCTGTAATGAGGCATTGTCTGAAGGCGTCATCGCCATAGCCGACCTTGGCTGCTCGTCGGGACCAAACGCGCTGTTTGCTGTCTCAGAGATCACGACCATTTTTCACAAGAAGTGTTGTCAACTCGGCCGATCCCCGCCGGAGTTTATAGTTTTCTTGAATGATCTCCCCGGAAACGATTTCAACACGGTTTTCAGGTCTCTCCCTAGTTTGCGCGACCAACTCCAGAAGGAGAATGGAGAGAAGTTTGGGGATTGTTTCATTGCAGGTGTTCCTGGTTCCTTCTATGGAAGGCTGTTTCCCTCTAGAAGCCTGCATTTCGTTCACTCTTCTTTGAGCCTTCATTGGCTCTCCCAGATTCCTCCAGAGTTGAATGACAGGGAAAATGGATTGATCAACAAAGGGAAAATTTTCATATCGAAGACAAGCCCACCGGCGGTGATCGAAGCTTACTCAGCTCAGTTTTGGAAAGACTTCTCTTTGTTCCTAAAATCACGTTCGGAAGAAGTAGTCGGCGGAGGTCGGATGGTCTTCACCTTGAAAGCAAGGACAACCTCGGACCCAACCCCGGATGAAACCTGTCTACTCTGGGACTACCTGGGACAAGCCTTTCTTGATTTGGTTGCAGAGGGGCTGATGGACGAGGAAAAGCTAGATGCTTACAACGTACCGTTCTACGAGCCATATGTAGAAGATATCAGAGGGGAGATAGAGAGAGAAGGATCGTTCTCGCTTCATCGGCTGGAGACCATTGTGATGCCCTGGAACAACGGCAATGGCGGCGGGAAGTACGATAGAGCAGCAACAGCTGAACGAATGGCCATGGCGATCAGAGCAGTGAATGAATCGATGTTAGAGAGCCATTTCGGACCCCAAATTATCGACCCGTTGTTCCGGCGATTCGTCCAAGTTATGGCTGCTGATACGAAGGAATCGCAAACTGTAATCGTCATTGTTTCGTTGATCAGAAAAGATTGA 1077 48.93 MNLYLRSIILSVHGLQNAFQSMSRPQLEQAVVGLCNEALSEGVIAIADLGCSSGPNALFAVSEITTIFHKKCCQLGRSPPEFIVFLNDLPGNDFNTVFRSLPSLRDQLQKENGEKFGDCFIAGVPGSFYGRLFPSRSLHFVHSSLSLHWLSQIPPELNDRENGLINKGKIFISKTSPPAVIEAYSAQFWKDFSLFLKSRSEEVVGGGRMVFTLKARTTSDPTPDETCLLWDYLGQAFLDLVAEGLMDEEKLDAYNVPFYEPYVEDIRGEIEREGSFSLHRLETIVMPWNNGNGGGKYDRAATAERMAMAIRAVNESMLESHFGPQIIDPLFRRFVQVMAADTKESQTVIVIVSLIRKD 358
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9921252 9922517 + Bma017274.1 Bma03g00940 79613

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00940 358 Pfam SAM dependent carboxyl methyltransferase 33 355 IPR005299 GO:0008168
Bma03g00940 358 Gene3D Vaccinia Virus protein VP39 15 287 IPR029063 -
Bma03g00940 358 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 15 354 IPR029063 -
Bma03g00940 358 Gene3D - 152 345 IPR042086 -
Bma03g00940 358 PANTHER S-ADENOSYL-L-METHIONINE:CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN 15 355 IPR005299 GO:0008168
Bma03g00940 358 PANTHER JASMONATE O-METHYLTRANSFERASE-LIKE 15 355 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00940 K08241 E2.1.1.141; jasmonate O-methyltransferase [EC:2.1.1.141] K21483 tcc:18610736 469.544
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00940 Bma-Chr3:9921252 Bma03g00952 Bma-Chr3:10137582 0 dispersed
Bma09g00088 Bma-Chr9:2354875 Bma03g00940 Bma-Chr3:9921252 1.38E-82 dispersed
Bma14g01919 Bma-Chr14:40970258 Bma03g00940 Bma-Chr3:9921252 4.70E-59 dispersed
Bma03g00940 Bma-Chr3:9921252 Bma04g00217 Bma-Chr4:1857829 1.36E-112 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1152 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma03g00940 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013465 1 0 0 2 1 1 0 1 1 1 1 1 1 1 1 1 1 0 0 1 1 1 1 0 0 1 1 1 1 3 26
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma03g00940 Bma_Chr03 FPKM 12.287623 12.776416 9.931133 9.56409 6.692537 6.852667 7.241173 10.923515 10.576757 11.580616