Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bma03g00946 | ATGGATTTTATTGCGTATTCGTCTCGATTTTCCTCCTCATCGTCTTTTTCGTTATCTAATGTCGTCGAGAGGGTCAAGGACATCTGCTGCCACGCGGTTTCTGCAATTATTGGGAATATTCTCTCGGCGATCTTCACGTTCTCCTTCGCGTTAGTGGGCACCTTGTTAGGAGCCATGACAGGGGCATTGATTGGGCAAGAGACAGAGAGTGGATTTGTGAGAGGCGCTGCCGTCGGGGCGATTTCAGGAGCTGTTTTCTCCATCGAAGTCTTCGAATCATCTCTTATTCTTTGGCAGTCTGATGAATCTGGCATAGGCTGTCTTCTCTACCTGATTGATGTCATTTCAAGCCTCCTAAGCGGGAGACTCGTCCGAGAGCGAATTGGTCCGGCCATATTTAGTGCAGTTCAAAGCCAGATGGGCGTAGGAGAGATGAGCTTCGAAGACTTGCCTAACATCTTTGACACTAGCAGCGCCAAAGGGCTGCCTGGAGACTCAGTTGAGAAGATCCCAAAGATCACAATTTCAATGAACAATGACTTGGATGCCTCTGGAGAGAAAGCTTCTTGCTCAGTTTGCCTTCAGGACTTCCAACTGGGAGAGACAGTGAGAAGTTTACCTCACTGCCATCACATGTTTCACTTACCTTGCATAGATAAATGGCTTCTCAAACATGGCTCTTGCCCTTTATGCAGGAGGGATTTATGA | 708 | 47.6 | MDFIAYSSRFSSSSSFSLSNVVERVKDICCHAVSAIIGNILSAIFTFSFALVGTLLGAMTGALIGQETESGFVRGAAVGAISGAVFSIEVFESSLILWQSDESGIGCLLYLIDVISSLLSGRLVRERIGPAIFSAVQSQMGVGEMSFEDLPNIFDTSSAKGLPGDSVEKIPKITISMNNDLDASGEKASCSVCLQDFQLGETVRSLPHCHHMFHLPCIDKWLLKHGSCPLCRRDL | 235 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 10025418 | 10026694 | + | Bma017283.1 | Bma03g00946 | 79619 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bma03g00946 | 235 | SMART | ring_2 | 190 | 231 | IPR001841 | - | |
| Bma03g00946 | 235 | CDD | RING-H2_PA-TM-RING | 190 | 232 | - | - | |
| Bma03g00946 | 235 | SUPERFAMILY | RING/U-box | 189 | 235 | - | - | |
| Bma03g00946 | 235 | PANTHER | NEP1-INTERACTING PROTEIN-LIKE 1 | 8 | 235 | - | - | |
| Bma03g00946 | 235 | Pfam | YMGG-like Gly-zipper | 48 | 85 | IPR027367 | - | |
| Bma03g00946 | 235 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 152 | 235 | IPR013083 | - | |
| Bma03g00946 | 235 | ProSiteProfiles | Zinc finger RING-type profile. | 190 | 232 | IPR001841 | - | |
| Bma03g00946 | 235 | Pfam | Ring finger domain | 189 | 232 | IPR001841 | - | |
| Bma03g00946 | 235 | PANTHER | NEP1-INTERACTING PROTEIN-LIKE 2 | 8 | 235 | IPR044523 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bma03g00946 | Bma-Chr3:10025418 | Bma14g00336 | Bma-Chr14:4188521 | 2.69E-25 | dispersed | |
| Bma09g00185 | Bma-Chr9:7221804 | Bma03g00946 | Bma-Chr3:10025418 | 2.34E-121 | transposed | |
| Bma03g00946 | Bma-Chr3:10025418 | Bma06g00083 | Bma-Chr6:1321675 | 1.22E-147 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bma03g00946 | - | - | csv:101220376 | 398.667 |