Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00954 ATGTCTTATCCTAACCCCAATAACAGAAACTCTCTATATCCTCAAGTTATTCAAACAAATCCTGATGCCCCTCCACCTCGTATCTCTCATTCCGATCTCAATCCGCCTTCTTCTTCTTCTAACCTTTATCCCACCATCGACATGAAAGATCTCGTTGAGAATCTGTTCCCGGACCGGGATGATTGTCACAACCCTGATCCTATTCCTCCTTCTGCTCCTCCTCTAGCGACGGAGGAGGTTATTTTCAAAATCTCTGGGGCCATTCTTAATCTCATTGACAGGCATTATAGTGTCGAGCTCGCTTGTGGTGATTTTTCCATTGTCCTTCTACGACAGGGCGAAAATGTGATTGCAGTGCTCGCCCGGGTCGCTGATGAGATCCAATGGCCTTTGACAAAGGATGAAGTGGCCGTTAAACTCGACGAATCACATTACTTCTTCTCTCTTCGCGCTCCGAAAAAGGAAGATTCCAGTTCCGATTCCGATTCGAGCGACGAGGAGGGGGGAAGAAGGAACGACCAGGGCTCTGAAAACATGTTGAATTACGGGCTAACGGTCATGTTGGCAATTTTAATTGGACTTTTAACAATATTGACATGGCATTTTACGAAGATCTACACAGCCGAGTCCCTGAGCAGTTTAGCATATGGTCTGCGACATGAGCTTCTACAACGTCCAATTCTAAAAATGTCGAGCATCTTGAACTCCGCTTCTGAAATAACAACAGCCCAGGTTAAGCTCTCGGAGTACATCATAAGAAAGTACGATAAGCCTGCAAGTCAAGCACAGGAAGTTGAGTTGTATGAATCAATGAAGGCTGTAACTTGGGCTTTATTTGCAAGTGAAAAAGCTCTGGACGCCATCACTATCAACTACAGAAACGGTTTTGTACAGGCATTTCATAGAGATCATAGTAGCAATAATACGTTCTATATTTACTCTGATCTCACCAACTATTCCATCAGTTCTACTGAGTCTTATAACCTGAGTAGACTGCCATTAGATCAAGGCTGGTCGGACCATCCAATTCACGGCAACCTTTCTGCAATTTGGTATCAGGAACCACTCGATCCTGTCAGTGGTGTAAAGATTGGAAAATCAAGGTCAATCCCTCCCGAGGATTTGATTAATATCGCTGGAATTTCGCAAGTGCCATATGGTGTGGCCTCATGGGATGTGACTGTCAGCAAGTATATGGACTCACCGTTACTTTCTGCTGCATTGCCTGTCTCAGACCCTTCAAATGAAAGTATTATTGCTGTTGTGGGTGTCACCACTGCACTTTCTAGCGTAGGCCAGCTGATGAAAGAGCTTGTTGAATATCATAGCGGGCATATTTATCTGACGTCTCAAGAGGGTTACTTGCTAGCTACTTCAACCAATGCTCCACTTTTGACAAAAACTATCAAGGGTCCAAAGCTTACGATGGCTGTAGATTCTGAGGATGACTCGATACGATTAGGTGCTGAATGGCTGCAGAAAACATACGGCTACAAGTTTCCTAATCACGAGGTTCATGCAGAGAATGTCAAGCTTGGTCACCAGCAATATTACATCGACTCATTTTTCCTCAATTTAAAGAGACTTCCTATTGTTGGGGTTGTCATCATTCCAAGAAAATACATAATGGGGAAGGTTGATGAGAAAGCTTTCAAAACACTGGTTATCCTAATATCTGCGTCATTATGTATCTTAGTCATTGGATGTGTCTGCATTTTCATTTTGACCAACGGAGTATCGAAGGAAATGAAACTAAGAGCAGAGTTGATAAGCCACCTGGATGCAAGAAGAAGGGCTGAGGCATCTAACAACTACAAAAGCCAATTTCTAGCAAATATGAGTCATGAGTTACGGACACCGATGGCTGCGGTGATTGGACTGTTGGACATTCTTATGTGTGATGATTGCATAACAAATGAGCAGTATGCTACAGTTTCCCAGATTCGGAAATGCTCAACAGCTCTACTCCGGCTACTAAACAACATATTGGACTTGAGCAAGGTTGAATCTGGAAAATTAGTGCTGGACGAAGCTGAGTTTGACCTGGGACGGGAACTTGAAGGTCTTGTCGATATGTTTTCTGTGCAGTGCATTAACCACAACGTGGAGACTGTGTTAGATCTTTCTGATGATATGCCGAGATTAGTTCGGGGAGACTCTGGTAGAGTTGTTCAAATATTTGCAAATTTGATCAGCAATTCTATCAAGTTTACGGCATCTGGTCACATTATTCTTCGCGGGTGGTGTGAGAGCTCAAGTTCTTTAAGTGATGGTGGGAAGTTTTCTTTTGATCAGAAGAGATCTCTGTTTCCCAGTCGGATGAAACTGAAGCAACAGGGACATCATATGAGAAGCACATACAAGAAGGATAATAAAATGGCTCTCTGGTTTGAAGTTGATGACACAGGGTGTGGAATTGATCCGAGCAAATGGGAGTCTGTCTTTGAAAGCTTCGAGCAAGCTGACCCCTCAACGACCCGAACGCATGGAGGCACGGGTCTCGGACTATGCATTGTCCGAACTTTGGTGAAGCAGATGGGGGGAGAAATCAAGGTTGTGAAAAAGGATGGTCTAGGAACTCTAATGCAATTCTACTTGGTCCTAAGCACACCAAAGGATGCCTTGGACCAACGCTGTCAAATAGATTTTTCAGAGCACAATATGGTGTTATTGCTCGCCGTACGAGGGAACATGAGTAGATTGATCATGTCCGAATGGCTTCGTAAAATTGGAGTGCTAACTGTTCAAGCGTCCGAGTGGAATGGTTTGACAGTAATTCTTCAAGAACTATTCCAAGGAAGAAATCATGGATCTCTGGCTGGATCTTTCGGAACTGAATCATTCGATATTCAAGCCGTGAGAAGTCGCATCTTCATCACTTTTGTTGACGTTGGGCTACTTGACTTGAGCACGAATATATGGAAAGAACAACTTAACTTCCTGGATAAATACTCGGGAAAGACTAAGTTTGCGTGGATGTTAAATCACGATACCTCCAATGTGGTAAAGATGGAGCTTCGGAGGAAAGGGCACTTGTTAATGATCAACAGACCTCTGTACAAGGCGAAAATGATTCAGATTCTGGAAGCTGTGCTGAAGGAAAAAAATGATGAACACCCAAAAAGAAGTTTGAATTCTTTGCAATCTTTATCGAAGGAAGGCAACTTCTACGAATGCCTCGAAATCGATTCCACTCATTTTGATAACGGCAGCTCGGACGATTCTGATGTACCCAAATCGGGTAGTTCGAACTCTAAATGTTCATTTCAAGTTGGAGAAAAACAAAGAGATAGGATTACAAAGCCATGCAGGTCAACTTATCAGAAAGGCAACAGTTTTCTAGTAGAATCAACTGCTGTATATTCAAAGGAAAGTGGGCCCATTTCATCAGCAAATTCTGAATTTCAAGAACAGAATTTAAAGAAAGAAGATGGCGAATTGAATTCTCAACACGATCCCTGTCAAAAATCTCTCGAAGGAGTACGAATTCTACTTGCAGAAGACACACCAGTTCTCCAAAGAGTGACGGCTAAAATGCTCGAAAAAATGGGAGCTGAAGTTGTTGCAGTGGGAGATGGAGTGCAGGCAGTAGACGCAATATCATCGATGGTAGAAGTCGAAGAAAACGGCAGGGAATCTTCGACCAAAGTCGGGGATGCGGATGCCACCTCATATGACTTGATCTTAATGGACTGTCAAGTAAGAACCACAAACAATCTCCTTTTCTTTACGTTCGGATTTCTTACAAAGGTCAGTAATTAA 3762 43.04 MSYPNPNNRNSLYPQVIQTNPDAPPPRISHSDLNPPSSSSNLYPTIDMKDLVENLFPDRDDCHNPDPIPPSAPPLATEEVIFKISGAILNLIDRHYSVELACGDFSIVLLRQGENVIAVLARVADEIQWPLTKDEVAVKLDESHYFFSLRAPKKEDSSSDSDSSDEEGGRRNDQGSENMLNYGLTVMLAILIGLLTILTWHFTKIYTAESLSSLAYGLRHELLQRPILKMSSILNSASEITTAQVKLSEYIIRKYDKPASQAQEVELYESMKAVTWALFASEKALDAITINYRNGFVQAFHRDHSSNNTFYIYSDLTNYSISSTESYNLSRLPLDQGWSDHPIHGNLSAIWYQEPLDPVSGVKIGKSRSIPPEDLINIAGISQVPYGVASWDVTVSKYMDSPLLSAALPVSDPSNESIIAVVGVTTALSSVGQLMKELVEYHSGHIYLTSQEGYLLATSTNAPLLTKTIKGPKLTMAVDSEDDSIRLGAEWLQKTYGYKFPNHEVHAENVKLGHQQYYIDSFFLNLKRLPIVGVVIIPRKYIMGKVDEKAFKTLVILISASLCILVIGCVCIFILTNGVSKEMKLRAELISHLDARRRAEASNNYKSQFLANMSHELRTPMAAVIGLLDILMCDDCITNEQYATVSQIRKCSTALLRLLNNILDLSKVESGKLVLDEAEFDLGRELEGLVDMFSVQCINHNVETVLDLSDDMPRLVRGDSGRVVQIFANLISNSIKFTASGHIILRGWCESSSSLSDGGKFSFDQKRSLFPSRMKLKQQGHHMRSTYKKDNKMALWFEVDDTGCGIDPSKWESVFESFEQADPSTTRTHGGTGLGLCIVRTLVKQMGGEIKVVKKDGLGTLMQFYLVLSTPKDALDQRCQIDFSEHNMVLLLAVRGNMSRLIMSEWLRKIGVLTVQASEWNGLTVILQELFQGRNHGSLAGSFGTESFDIQAVRSRIFITFVDVGLLDLSTNIWKEQLNFLDKYSGKTKFAWMLNHDTSNVVKMELRRKGHLLMINRPLYKAKMIQILEAVLKEKNDEHPKRSLNSLQSLSKEGNFYECLEIDSTHFDNGSSDDSDVPKSGSSNSKCSFQVGEKQRDRITKPCRSTYQKGNSFLVESTAVYSKESGPISSANSEFQEQNLKKEDGELNSQHDPCQKSLEGVRILLAEDTPVLQRVTAKMLEKMGAEVVAVGDGVQAVDAISSMVEVEENGRESSTKVGDADATSYDLILMDCQVRTTNNLLFFTFGFLTKVSN 1253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10148622 10159448 - Bma017293.1 Bma03g00954 79627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00954 1253 MobiDBLite consensus disorder prediction 1 40 - -
Bma03g00954 1253 MobiDBLite consensus disorder prediction 1 25 - -
Bma03g00954 1253 PANTHER TWO-COMPONENT HISTIDINE KINASE 1154 1234 - -
Bma03g00954 1253 Gene3D - 1154 1234 - -
Bma03g00954 1253 Gene3D - 593 672 - -
Bma03g00954 1253 ProSiteProfiles Response regulatory domain profile. 1162 1253 IPR001789 GO:0000160
Bma03g00954 1253 PANTHER OSMOSENSOR HISTIDINE KINASE 1154 1234 - -
Bma03g00954 1253 PANTHER OSMOSENSOR HISTIDINE KINASE 184 1130 - -
Bma03g00954 1253 Gene3D - 673 873 IPR036890 -
Bma03g00954 1253 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 593 672 IPR036097 GO:0000155|GO:0007165
Bma03g00954 1253 CDD HisKA 606 667 IPR003661 GO:0000155|GO:0007165
Bma03g00954 1253 MobiDBLite consensus disorder prediction 1074 1090 - -
Bma03g00954 1253 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 718 869 IPR003594 -
Bma03g00954 1253 SUPERFAMILY CheY-like 1159 1234 IPR011006 -
Bma03g00954 1253 MobiDBLite consensus disorder prediction 151 175 - -
Bma03g00954 1253 PRINTS Bacterial sensor protein C-terminal signature 795 809 IPR004358 GO:0016310|GO:0016772
Bma03g00954 1253 PRINTS Bacterial sensor protein C-terminal signature 813 823 IPR004358 GO:0016310|GO:0016772
Bma03g00954 1253 PRINTS Bacterial sensor protein C-terminal signature 830 848 IPR004358 GO:0016310|GO:0016772
Bma03g00954 1253 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 660 867 IPR036890 -
Bma03g00954 1253 SMART HKATPase_4 718 870 IPR003594 -
Bma03g00954 1253 Pfam His Kinase A (phospho-acceptor) domain 606 671 IPR003661 GO:0000155|GO:0007165
Bma03g00954 1253 ProSiteProfiles Histidine kinase domain profile. 612 870 IPR005467 -
Bma03g00954 1253 MobiDBLite consensus disorder prediction 151 173 - -
Bma03g00954 1253 SMART HisKA_10 605 671 IPR003661 GO:0000155|GO:0007165
Bma03g00954 1253 PANTHER TWO-COMPONENT HISTIDINE KINASE 184 1130 - -
Bma03g00954 1253 MobiDBLite consensus disorder prediction 1069 1093 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00954 Bma-Chr3:10148622 Bma04g00854 Bma-Chr4:10775691 2.38E-44 dispersed
Bma11g00538 Bma-Chr11:6869692 Bma03g00954 Bma-Chr3:10148622 4.40E-14 dispersed
Bma03g00954 Bma-Chr3:10148622 Bma06g00091 Bma-Chr6:1397987 6.18E-73 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00954 - - cmo:103490686 1514.59