Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00954 ATGTCTTATCCTAACCCCAATAACAGAAACTCTCTATATCCTCAAGTTATTCAAACAAATCCTGATGCCCCTCCACCTCGTATCTCTCATTCCGATCTCAATCCGCCTTCTTCTTCTTCTAACCTTTATCCCACCATCGACATGAAAGATCTCGTTGAGAATCTGTTCCCGGACCGGGATGATTGTCACAACCCTGATCCTATTCCTCCTTCTGCTCCTCCTCTAGCGACGGAGGAGGTTATTTTCAAAATCTCTGGGGCCATTCTTAATCTCATTGACAGGCATTATAGTGTCGAGCTCGCTTGTGGTGATTTTTCCATTGTCCTTCTACGACAGGGCGAAAATGTGATTGCAGTGCTCGCCCGGGTCGCTGATGAGATCCAATGGCCTTTGACAAAGGATGAAGTGGCCGTTAAACTCGACGAATCACATTACTTCTTCTCTCTTCGCGCTCCGAAAAAGGAAGATTCCAGTTCCGATTCCGATTCGAGCGACGAGGAGGGGGGAAGAAGGAACGACCAGGGCTCTGAAAACATGTTGAATTACGGGCTAACGGTCATGTTGGCAATTTTAATTGGACTTTTAACAATATTGACATGGCATTTTACGAAGATCTACACAGCCGAGTCCCTGAGCAGTTTAGCATATGGTCTGCGACATGAGCTTCTACAACGTCCAATTCTAAAAATGTCGAGCATCTTGAACTCCGCTTCTGAAATAACAACAGCCCAGGTTAAGCTCTCGGAGTACATCATAAGAAAGTACGATAAGCCTGCAAGTCAAGCACAGGAAGTTGAGTTGTATGAATCAATGAAGGCTGTAACTTGGGCTTTATTTGCAAGTGAAAAAGCTCTGGACGCCATCACTATCAACTACAGAAACGGTTTTGTACAGGCATTTCATAGAGATCATAGTAGCAATAATACGTTCTATATTTACTCTGATCTCACCAACTATTCCATCAGTTCTACTGAGTCTTATAACCTGAGTAGACTGCCATTAGATCAAGGCTGGTCGGACCATCCAATTCACGGCAACCTTTCTGCAATTTGGTATCAGGAACCACTCGATCCTGTCAGTGGTGTAAAGATTGGAAAATCAAGGTCAATCCCTCCCGAGGATTTGATTAATATCGCTGGAATTTCGCAAGTGCCATATGGTGTGGCCTCATGGGATGTGACTGTCAGCAAGTATATGGACTCACCGTTACTTTCTGCTGCATTGCCTGTCTCAGACCCTTCAAATGAAAGTATTATTGCTGTTGTGGGTGTCACCACTGCACTTTCTAGCGTAGGCCAGCTGATGAAAGAGCTTGTTGAATATCATAGCGGGCATATTTATCTGACGTCTCAAGAGGGTTACTTGCTAGCTACTTCAACCAATGCTCCACTTTTGACAAAAACTATCAAGGGTCCAAAGCTTACGATGGCTGTAGATTCTGAGGATGACTCGATACGATTAGGTGCTGAATGGCTGCAGAAAACATACGGCTACAAGTTTCCTAATCACGAGGTTCATGCAGAGAATGTCAAGCTTGGTCACCAGCAATATTACATCGACTCATTTTTCCTCAATTTAAAGAGACTTCCTATTGTTGGGGTTGTCATCATTCCAAGAAAATACATAATGGGGAAGGTTGATGAGAAAGCTTTCAAAACACTGGTTATCCTAATATCTGCGTCATTATGTATCTTAGTCATTGGATGTGTCTGCATTTTCATTTTGACCAACGGAGTATCGAAGGAAATGAAACTAAGAGCAGAGTTGATAAGCCACCTGGATGCAAGAAGAAGGGCTGAGGCATCTAACAACTACAAAAGCCAATTTCTAGCAAATATGAGTCATGAGTTACGGACACCGATGGCTGCGGTGATTGGACTGTTGGACATTCTTATGTGTGATGATTGCATAACAAATGAGCAGTATGCTACAGTTTCCCAGATTCGGAAATGCTCAACAGCTCTACTCCGGCTACTAAACAACATATTGGACTTGAGCAAGGTTGAATCTGGAAAATTAGTGCTGGACGAAGCTGAGTTTGACCTGGGACGGGAACTTGAAGGTCTTGTCGATATGTTTTCTGTGCAGTGCATTAACCACAACGTGGAGACTGTGTTAGATCTTTCTGATGATATGCCGAGATTAGTTCGGGGAGACTCTGGTAGAGTTGTTCAAATATTTGCAAATTTGATCAGCAATTCTATCAAGTTTACGGCATCTGGTCACATTATTCTTCGCGGGTGGTGTGAGAGCTCAAGTTCTTTAAGTGATGGTGGGAAGTTTTCTTTTGATCAGAAGAGATCTCTGTTTCCCAGTCGGATGAAACTGAAGCAACAGGGACATCATATGAGAAGCACATACAAGAAGGATAATAAAATGGCTCTCTGGTTTGAAGTTGATGACACAGGGTGTGGAATTGATCCGAGCAAATGGGAGTCTGTCTTTGAAAGCTTCGAGCAAGCTGACCCCTCAACGACCCGAACGCATGGAGGCACGGGTCTCGGACTATGCATTGTCCGAACTTTGGTGAAGCAGATGGGGGGAGAAATCAAGGTTGTGAAAAAGGATGGTCTAGGAACTCTAATGCAATTCTACTTGGTCCTAAGCACACCAAAGGATGCCTTGGACCAACGCTGTCAAATAGATTTTTCAGAGCACAATATGGTGTTATTGCTCGCCGTACGAGGGAACATGAGTAGATTGATCATGTCCGAATGGCTTCGTAAAATTGGAGTGCTAACTGTTCAAGCGTCCGAGTGGAATGGTTTGACAGTAATTCTTCAAGAACTATTCCAAGGAAGAAATCATGGATCTCTGGCTGGATCTTTCGGAACTGAATCATTCGATATTCAAGCCGTGAGAAGTCGCATCTTCATCACTTTTGTTGACGTTGGGCTACTTGACTTGAGCACGAATATATGGAAAGAACAACTTAACTTCCTGGATAAATACTCGGGAAAGACTAAGTTTGCGTGGATGTTAAATCACGATACCTCCAATGTGGTAAAGATGGAGCTTCGGAGGAAAGGGCACTTGTTAATGATCAACAGACCTCTGTACAAGGCGAAAATGATTCAGATTCTGGAAGCTGTGCTGAAGGAAAAAAATGATGAACACCCAAAAAGAAGTTTGAATTCTTTGCAATCTTTATCGAAGGAAGGCAACTTCTACGAATGCCTCGAAATCGATTCCACTCATTTTGATAACGGCAGCTCGGACGATTCTGATGTACCCAAATCGGGTAGTTCGAACTCTAAATGTTCATTTCAAGTTGGAGAAAAACAAAGAGATAGGATTACAAAGCCATGCAGGTCAACTTATCAGAAAGGCAACAGTTTTCTAGTAGAATCAACTGCTGTATATTCAAAGGAAAGTGGGCCCATTTCATCAGCAAATTCTGAATTTCAAGAACAGAATTTAAAGAAAGAAGATGGCGAATTGAATTCTCAACACGATCCCTGTCAAAAATCTCTCGAAGGAGTACGAATTCTACTTGCAGAAGACACACCAGTTCTCCAAAGAGTGACGGCTAAAATGCTCGAAAAAATGGGAGCTGAAGTTGTTGCAGTGGGAGATGGAGTGCAGGCAGTAGACGCAATATCATCGATGGTAGAAGTCGAAGAAAACGGCAGGGAATCTTCGACCAAAGTCGGGGATGCGGATGCCACCTCATATGACTTGATCTTAATGGACTGTCAAGTAAGAACCACAAACAATCTCCTTTTCTTTACGTTCGGATTTCTTACAAAGGTCAGTAATTAA 3762 43.04 MSYPNPNNRNSLYPQVIQTNPDAPPPRISHSDLNPPSSSSNLYPTIDMKDLVENLFPDRDDCHNPDPIPPSAPPLATEEVIFKISGAILNLIDRHYSVELACGDFSIVLLRQGENVIAVLARVADEIQWPLTKDEVAVKLDESHYFFSLRAPKKEDSSSDSDSSDEEGGRRNDQGSENMLNYGLTVMLAILIGLLTILTWHFTKIYTAESLSSLAYGLRHELLQRPILKMSSILNSASEITTAQVKLSEYIIRKYDKPASQAQEVELYESMKAVTWALFASEKALDAITINYRNGFVQAFHRDHSSNNTFYIYSDLTNYSISSTESYNLSRLPLDQGWSDHPIHGNLSAIWYQEPLDPVSGVKIGKSRSIPPEDLINIAGISQVPYGVASWDVTVSKYMDSPLLSAALPVSDPSNESIIAVVGVTTALSSVGQLMKELVEYHSGHIYLTSQEGYLLATSTNAPLLTKTIKGPKLTMAVDSEDDSIRLGAEWLQKTYGYKFPNHEVHAENVKLGHQQYYIDSFFLNLKRLPIVGVVIIPRKYIMGKVDEKAFKTLVILISASLCILVIGCVCIFILTNGVSKEMKLRAELISHLDARRRAEASNNYKSQFLANMSHELRTPMAAVIGLLDILMCDDCITNEQYATVSQIRKCSTALLRLLNNILDLSKVESGKLVLDEAEFDLGRELEGLVDMFSVQCINHNVETVLDLSDDMPRLVRGDSGRVVQIFANLISNSIKFTASGHIILRGWCESSSSLSDGGKFSFDQKRSLFPSRMKLKQQGHHMRSTYKKDNKMALWFEVDDTGCGIDPSKWESVFESFEQADPSTTRTHGGTGLGLCIVRTLVKQMGGEIKVVKKDGLGTLMQFYLVLSTPKDALDQRCQIDFSEHNMVLLLAVRGNMSRLIMSEWLRKIGVLTVQASEWNGLTVILQELFQGRNHGSLAGSFGTESFDIQAVRSRIFITFVDVGLLDLSTNIWKEQLNFLDKYSGKTKFAWMLNHDTSNVVKMELRRKGHLLMINRPLYKAKMIQILEAVLKEKNDEHPKRSLNSLQSLSKEGNFYECLEIDSTHFDNGSSDDSDVPKSGSSNSKCSFQVGEKQRDRITKPCRSTYQKGNSFLVESTAVYSKESGPISSANSEFQEQNLKKEDGELNSQHDPCQKSLEGVRILLAEDTPVLQRVTAKMLEKMGAEVVAVGDGVQAVDAISSMVEVEENGRESSTKVGDADATSYDLILMDCQVRTTNNLLFFTFGFLTKVSN 1253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10148622 10159448 - Bma017293.1 Bma03g00954 79627

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00954 1253 MobiDBLite consensus disorder prediction 1 40 - -
Bma03g00954 1253 MobiDBLite consensus disorder prediction 1 25 - -
Bma03g00954 1253 PANTHER TWO-COMPONENT HISTIDINE KINASE 1154 1234 - -
Bma03g00954 1253 Gene3D - 1154 1234 - -
Bma03g00954 1253 Gene3D - 593 672 - -
Bma03g00954 1253 ProSiteProfiles Response regulatory domain profile. 1162 1253 IPR001789 GO:0000160
Bma03g00954 1253 PANTHER OSMOSENSOR HISTIDINE KINASE 1154 1234 - -
Bma03g00954 1253 PANTHER OSMOSENSOR HISTIDINE KINASE 184 1130 - -
Bma03g00954 1253 Gene3D - 673 873 IPR036890 -
Bma03g00954 1253 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 593 672 IPR036097 GO:0000155|GO:0007165
Bma03g00954 1253 CDD HisKA 606 667 IPR003661 GO:0000155|GO:0007165
Bma03g00954 1253 MobiDBLite consensus disorder prediction 1074 1090 - -
Bma03g00954 1253 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 718 869 IPR003594 -
Bma03g00954 1253 SUPERFAMILY CheY-like 1159 1234 IPR011006 -
Bma03g00954 1253 MobiDBLite consensus disorder prediction 151 175 - -
Bma03g00954 1253 PRINTS Bacterial sensor protein C-terminal signature 795 809 IPR004358 GO:0016310|GO:0016772
Bma03g00954 1253 PRINTS Bacterial sensor protein C-terminal signature 813 823 IPR004358 GO:0016310|GO:0016772
Bma03g00954 1253 PRINTS Bacterial sensor protein C-terminal signature 830 848 IPR004358 GO:0016310|GO:0016772
Bma03g00954 1253 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 660 867 IPR036890 -
Bma03g00954 1253 SMART HKATPase_4 718 870 IPR003594 -
Bma03g00954 1253 Pfam His Kinase A (phospho-acceptor) domain 606 671 IPR003661 GO:0000155|GO:0007165
Bma03g00954 1253 ProSiteProfiles Histidine kinase domain profile. 612 870 IPR005467 -
Bma03g00954 1253 MobiDBLite consensus disorder prediction 151 173 - -
Bma03g00954 1253 SMART HisKA_10 605 671 IPR003661 GO:0000155|GO:0007165
Bma03g00954 1253 PANTHER TWO-COMPONENT HISTIDINE KINASE 184 1130 - -
Bma03g00954 1253 MobiDBLite consensus disorder prediction 1069 1093 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00954 - - - cmo:103490686 1514.59
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00954 Bma-Chr3:10148622 Bma04g00854 Bma-Chr4:10775691 2.38E-44 dispersed
Bma11g00538 Bma-Chr11:6869692 Bma03g00954 Bma-Chr3:10148622 4.40E-14 dispersed
Bma03g00954 Bma-Chr3:10148622 Bma06g00091 Bma-Chr6:1397987 6.18E-73 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1138 Blo04g00878 Blo16g00087 . . Bpe15g00478 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0858 Cone12ag0821 . . . . . . . . . . . . Bma03g00954 . . . . Cma16g01243 . . . . . . . . . . . . . . . . . . . Lsi07g01094 . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma03g00954 . 186 1234 Histidine Kinase Gene Family AT2G17820 65.1 0.0e+00 1264.2
Bma14g01923 . 17 996 Histidine Kinase Gene Family AT2G01830 72.3 0.0e+00 1345.9
Bma04g00854 . 73 1029 Histidine Kinase Gene Family AT2G01830 52.9 9.1e-273 936.8
Bma02g01307 . 303 1275 Histidine Kinase Gene Family AT2G01830 51.4 5.5e-270 927.5
Bma01g00611 . 1 1119 Histidine Kinase Gene Family AT1G09570 76.7 0.0e+00 1754.2
Bma12g00850 . 12 1119 Histidine Kinase Gene Family AT1G09570 55.5 0.0e+00 1253.4
Bma05g00993 CCT 34 1122 Histidine Kinase Gene Family AT1G09570 53.8 0.0e+00 1171.0
Bma06g01466 CCT 29 1111 Histidine Kinase Gene Family AT1G09570 53.1 0.0e+00 1157.5
Bma01g01487 BCT 29 1105 Histidine Kinase Gene Family AT1G09570 51.1 4.8e-314 1073.9
Bma05g00993 CCT 12 1058 Histidine Kinase Gene Family AT2G18790 78.0 0.0e+00 1629.4
Bma06g01466 CCT 30 1084 Histidine Kinase Gene Family AT2G18790 74.6 0.0e+00 1598.2
Bma01g01487 BCT 8 1043 Histidine Kinase Gene Family AT2G18790 62.5 0.0e+00 1290.4
Bma14g00963 BCT 1 1025 Histidine Kinase Gene Family AT2G18790 58.5 0.0e+00 1215.7
Bma12g00850 . 23 1074 Histidine Kinase Gene Family AT2G18790 53.5 0.0e+00 1110.9
Bma01g00611 . 21 1055 Histidine Kinase Gene Family AT2G18790 51.2 8.4e-309 1056.6
Bma12g00850 . 10 1115 Histidine Kinase Gene Family AT5G35840 62.3 0.0e+00 1401.0
Bma05g00993 CCT 37 1118 Histidine Kinase Gene Family AT5G35840 52.1 0.0e+00 1116.7
Bma06g01466 CCT 21 1109 Histidine Kinase Gene Family AT5G35840 51.4 0.0e+00 1111.3
Bma01g00611 . 9 1114 Histidine Kinase Gene Family AT5G35840 50.2 0.0e+00 1097.8
Bma05g00993 CCT 8 1118 Histidine Kinase Gene Family AT4G16250 74.4 0.0e+00 1654.8
Bma06g01466 CCT 30 1108 Histidine Kinase Gene Family AT4G16250 74.0 0.0e+00 1619.8
Bma01g01487 BCT 29 1105 Histidine Kinase Gene Family AT4G16250 60.8 0.0e+00 1318.5
Bma14g00963 BCT 15 1087 Histidine Kinase Gene Family AT4G16250 57.0 0.0e+00 1237.2
Bma12g00850 . 24 1115 Histidine Kinase Gene Family AT4G16250 52.4 0.0e+00 1137.1
Bma01g01487 BCT 7 1106 Histidine Kinase Gene Family AT4G18130 64.5 0.0e+00 1409.8
Bma14g00963 BCT 19 1088 Histidine Kinase Gene Family AT4G18130 62.1 0.0e+00 1331.2
Bma05g00993 CCT 37 1119 Histidine Kinase Gene Family AT4G18130 58.6 0.0e+00 1250.3
Bma06g01466 CCT 38 1108 Histidine Kinase Gene Family AT4G18130 58.1 0.0e+00 1243.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005785 2 0 2 1 2 1 2 1 1 1 1 1 2 1 0 2 1 2 2 1 1 1 1 1 1 1 1 2 2 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma03g00954 Bma_Chr03 FPKM 3.704167 1.861353 19.658918 26.531345 3.87752 0.0 4.603864 17.769022 19.489002 22.077774