Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00956 ATGCGAAATGGTGATTATGCACCTTCTAGATTTCAAGCTCAAGCCGACGCTGTCAATCTAATTTGTGGAGCGAAGACGCAGTCTAATCCGGAGAATACAGTTGGATTGCTGACAATGGCTGGCAAAGGGGTTCGCGTTTTGGTAACTCCAACTAGTGATCTTGGAAAGATTCTGGCATGCATGCATGGTTTAGAGACAGGAGGTGAGATGAACCTAGCTGCTGGAATCCAGGTTGCCCAGTTGGCTCTTAAGCATCGTCAGAATAAAAAGCAGCAGCAAAGGATTATTGTCTTTGCTGGAAGTCCTATTAAACATGAAAAAAAGTTGTTGGAGACGATAGGAAGGAAGCTAAAGAAAAACAGTGTGGCACTTGATATCGTTGATTTCGGTGAAGAAGAAGATGGGAAGCCAGAGAAGCTTGAAGCACTTCTTGCAGCAGTCAACAATAATAACACCAGTCACATTGTGCATGTTCCAACTGGTCCAAATGCTCTTTGTGACGTACTTATTAGTACTCCTATCTTCACTGGAGATGGGGAGGGTGGAAGTGGATTTGCAGCTGCAGCTGCTGCAGCTGCAGCAGCTGGTGGTATATCTGGTTTTGATTTTGGTGTAGATCCGAATTTAGATCCTGAACTTGCCCTTGCTCTTAGAGTTTCAATGGAGGAGGAAAGGGCAAGGCAAGAGGCAGCTGCTAAAAAGGCTGCAGAGGATGCTGCCAAGCAGGACAAAGGAGGTGAACAGTCGTCTGTCTTGCAGGATGCATCCATGACTGAACGTTCTGGTGCTGCAACTTCTGATTTTGAGAATAAAACTGATTTAACGGATGATGAGAATGCTCTGCTACAGCAGGCCCTTGCAATGTCAATGGATGATCCCGCTTCTAGCCAGGAAATTCAGGACACAGATATGTCTGATGTTGTTGCAGATGATCCAGAGTTGGCTCTTGCTCTTCAGTTATCTGTGCAGGATGGTGCAAAAGAATCAGATAGCCAGACAGATATGAATAAGTTGTTGCTTCCAGGGGTTGATCCAAATGACCCGTCAGTTAAAGATTTGCTTGCTTCCATGCAAAGCCAGTCAGAAGTAAGTTTCTCTGCTTGTTACTGGCTTGGTGAAACGATGAGAGTAGTTCTGAACAATATACGTTTGAGTTATGGTGCCACTGGGTTATCTTGTAAAATTTCGCTTCTTTATAACAAATCAGTAATCAGTTACACATTTTTATGCTCGTGGGACAATATTGGATATAATTTGTGTTCTTGTACTCTATTTTACATTGCCTCTCATCATTATTGGATATAA 1305 43.37 MRNGDYAPSRFQAQADAVNLICGAKTQSNPENTVGLLTMAGKGVRVLVTPTSDLGKILACMHGLETGGEMNLAAGIQVAQLALKHRQNKKQQQRIIVFAGSPIKHEKKLLETIGRKLKKNSVALDIVDFGEEEDGKPEKLEALLAAVNNNNTSHIVHVPTGPNALCDVLISTPIFTGDGEGGSGFAAAAAAAAAAGGISGFDFGVDPNLDPELALALRVSMEEERARQEAAAKKAAEDAAKQDKGGEQSSVLQDASMTERSGAATSDFENKTDLTDDENALLQQALAMSMDDPASSQEIQDTDMSDVVADDPELALALQLSVQDGAKESDSQTDMNKLLLPGVDPNDPSVKDLLASMQSQSEVSFSACYWLGETMRVVLNNIRLSYGATGLSCKISLLYNKSVISYTFLCSWDNIGYNLCSCTLFYIASHHYWI 434
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10168418 10170896 - Bma017295.1 Bma03g00956 79629

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00956 434 Coils Coil 218 238 - -
Bma03g00956 434 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 208 227 IPR003903 -
Bma03g00956 434 Pfam Ubiquitin interaction motif 310 324 IPR003903 -
Bma03g00956 434 Pfam Ubiquitin interaction motif 277 292 IPR003903 -
Bma03g00956 434 Pfam Ubiquitin interaction motif 210 223 IPR003903 -
Bma03g00956 434 Pfam von Willebrand factor type A domain 1 100 IPR002035 -
Bma03g00956 434 SUPERFAMILY vWA-like 1 163 IPR036465 -
Bma03g00956 434 Gene3D von Willebrand factor, type A domain 1 171 IPR036465 -
Bma03g00956 434 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 277 296 IPR003903 -
Bma03g00956 434 SMART uim 208 227 IPR003903 -
Bma03g00956 434 SMART uim 277 296 IPR003903 -
Bma03g00956 434 SMART uim 309 328 IPR003903 -
Bma03g00956 434 Gene3D - 206 295 - -
Bma03g00956 434 MobiDBLite consensus disorder prediction 246 269 - -
Bma03g00956 434 MobiDBLite consensus disorder prediction 228 274 - -
Bma03g00956 434 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 4 HOMOLOG ISOFORM X1 1 363 - -
Bma03g00956 434 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 4 1 363 - -
Bma03g00956 434 MobiDBLite consensus disorder prediction 228 244 - -
Bma03g00956 434 CDD VWA_26S_proteasome_subunit 1 173 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00956 K03029 PSMD4, RPN10; 26S proteasome regulatory subunit N10 - zju:107424434 553.518
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma03g00956 Bma06g00092 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00956 Bma-Chr3:10168418 Bma06g00092 Bma-Chr6:1401068 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1132 . . . . Bpe15g00476 Bpe13g00410 . . . . . Cma07g00417 Car03g00623 Car07g00367 Sed14g1201 Cpe19g00866 Cpe10g00673 Bhi03g00846 Tan03g2094 Cmetu04g2423 . Hepe04g1603 . . . . . . . . . Cone8ag0856 . Cone6ag1691 Cone9ag1613 Lsi01g00589 . . Cme08g00943 . . . . . . Bma03g00956 Bma06g00092 . Cmo03g00701 Cmo07g00415 . . . . . . . . . . . . . . . . . . . . Lsi07g01096 Csa06g03341 Chy02g00560 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002659 1 1 0 2 2 1 4 1 2 2 2 1 3 2 2 4 1 3 4 1 2 1 2 2 2 2 2 2 2 2 58
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma03g00956 Bma_Chr03 FPKM 12.923432 13.389831 24.613331 26.568872 24.285904 23.826426 28.164463 33.648769 35.109142 34.992832