Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00960 ATGTGGAAAGAAAAGATCCAATTCCTCACTGCAAGGAAGGTTCAGAAGGCAGATCGAGAAAAATTGCGAAGGGATCGATTGAACGAACTATTTCTCGAGTTAGAAAACAAACTAGATAGGGCTAAGAATGACAAAGCAACCATTCTTGCAGAAACAATCCAAATTCTGAAGGATTTAACCGCCGAAGTAAACAGGCTGAAGGCTGAATTTGGTACTCTTTCTGAGGAATCGCAAGAGCTTACCCTAGAGAAGAATGAACTCAAGGAAGAGAAGGCTTCCTTAAAATCTGACATTGAAAATTTAAATACTCAGTACCAACAGAGATTAAGTGTGGTGTTTCCATGGGCTCATGTTGAATCGTATTCTTCTGTGGTGATGACCGGTCCGCCTTATTCATATACAGTTCCGGTGGCTGTACCTCCTGGGTCGCTTCCCCTGCCGCCATTTCCGTTCTTCGGAAATCAGAGGTCTGGTCCAGTTGCCAATCATGGTTCTGCATTTGTTCCGTTTATTACTGCAACTACTCGTCCAAATGAACAGACAGTTTCCCCTTATGGGTCTCCGGCTATCGGCTCTAGCAGACAAGATACTGAAGTGGCAACTGAGCTTCAACTAAAGATGCCCGGTTCATCACCTTCGCAGCAGTCAAACGAGTTTCTTTTCCAGGATTTGTCTTCTGGAGTTACGAAGTCAGTGGAATTACAGAGAAAAGAACAAATTGGAGCAGACGGAAGTTCGTCGAGCGTATATTCATTGACCCAAGTTCAGGACAGCTCGTGCAACAGTGTGGGCAACGTTTTGAAGTCAAAATGA 813 44.16 MWKEKIQFLTARKVQKADREKLRRDRLNELFLELENKLDRAKNDKATILAETIQILKDLTAEVNRLKAEFGTLSEESQELTLEKNELKEEKASLKSDIENLNTQYQQRLSVVFPWAHVESYSSVVMTGPPYSYTVPVAVPPGSLPLPPFPFFGNQRSGPVANHGSAFVPFITATTRPNEQTVSPYGSPAIGSSRQDTEVATELQLKMPGSSPSQQSNEFLFQDLSSGVTKSVELQRKEQIGADGSSSSVYSLTQVQDSSCNSVGNVLKSK 270
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10194011 10195046 + Bma017299.1 Bma03g00960 79633

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00960 270 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 12 86 IPR036638 GO:0046983
Bma03g00960 270 MobiDBLite consensus disorder prediction 239 270 - -
Bma03g00960 270 PANTHER TRANSCRIPTION FACTOR BHLH121 193 269 IPR044579 GO:0003700|GO:0055072
Bma03g00960 270 PANTHER TRANSCRIPTION FACTOR BHLH121 7 192 IPR044579 GO:0003700|GO:0055072
Bma03g00960 270 SMART finulus 17 65 IPR011598 GO:0046983
Bma03g00960 270 MobiDBLite consensus disorder prediction 240 270 - -
Bma03g00960 270 CDD bHLH_AtILR3_like 16 88 - -
Bma03g00960 270 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 11 59 IPR011598 GO:0046983
Bma03g00960 270 Coils Coil 17 104 - -
Bma03g00960 270 MobiDBLite consensus disorder prediction 178 197 - -
Bma03g00960 270 Gene3D - 19 106 IPR036638 GO:0046983
Bma03g00960 270 Pfam Helix-loop-helix DNA-binding domain 12 59 IPR011598 GO:0046983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00960 - - - zju:107424369 234.958
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00960 Bma-Chr3:10194011 Bma12g00554 Bma-Chr12:23076784 2.02E-59 dispersed
Bma03g00960 Bma-Chr3:10194011 Bma14g00357 Bma-Chr14:4355988 8.44E-16 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1114 Blo04g00884 . . . . . . . . . Cma03g00685 Cma07g00427 Car03g00631 Car07g00374 Sed14g1197 Cpe19g00860 Cpe10g00664 Bhi03g00866 Tan03g2084 Cmetu04g0958 . Hepe04g1592 . . Cla01g01980 Cam01g2074 Cec04g1733 Cco04g1798 Clacu01g2095 Cmu01g1971 Cre04g1646 Cone8ag0851 Cone12ag0715 . . Lsi01g00601 . . Cme08g00928 . . . . . . Bma03g00960 . Sed01g0221 Cmo03g00709 Cmo07g00424 . . . . . . Bhi10g01891 Tan05g1191 Cmetu11g1417 . Hepe08g0945 . . . . . . . . . . Csa06g03326 Chy02g00573 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001472 1 2 3 3 2 2 2 2 2 2 2 2 3 1 2 3 2 4 3 2 2 2 2 2 2 2 2 6 5 2 72
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57046 PF00010 HLH 1.10E-05 No_clan Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma03g00960 Bma_Chr03 FPKM 5.745833 6.820112 2.264729 3.81676 3.147737 4.050424 2.35055 2.854253 2.656392 2.681336