Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00969 ATGTTGCGCAAGCTGAACCTCCGGTCCAATGCCTTCAATGGCACCATTCCCGCCTCCCTCTCCAAATGTTCGTCGCTCCAAGAAGTGTTGTTACAGCACAACTCACTTTCCGGCAGCCTCCCACTGGAGATCGCAAACCTCACAAATCTCCAAACTCTCAGCTTGGCGCAAAACATGCTTTCCGGGGTAATCCCCGGCGTCCTTCCGACTAACCTGAACTACTTAGATCTTTCGTCAAACTCATTTACCGGCGAGATACCCGAAAATATCTCAAGCCTGACCCATCTCAAGCTCATTAACTTCTCGCACAACCAGTTCGGCGGAGAGATTCCTCCGAGTTTGGGTCAACTTCAAAACCTTCAATACCTTGTCCTCGATTACAATATTTTGGGAGGAACTCTACCTTCTGCTATATCTAATTGTTCATCCCTACTACATTTGAGCGTCGAAGGGAACTCGCTCAGAGGCATAATTTCAGCATCCATTGGAGCTCTTCCAAACCTTCAAGTGGTTTCTCTATCACATAATAGTCTTTCCGGTTCAGTCCCTTCCTCATTTTTCTGCAACGCCTCGCGTTCTCCGCCGTCACTTCAAGTCGTTCAGTTAGGCTTTAATGCATTCACGGAAATCGGCGGGACGCAGGAAGCGACTTGTTTTAGCGTTCTTCAGGTTTTGGATCTTCAGCGAAATCAGATAACCGGCTTGTTTGGCTCCTGGTTAACACAGATTTCTACTTTGACAATGCTGGACATCTCAGGTAACTCCTTTTCCGGCGAGATTTCCACAGACATTGGAAAGCTCTTGATGTTGGAAGAATTGAAAATGGCAGATAATTTATTTACTGGAGAAATTCCTGATTCTTTTTCTCACATGAATGGATTAAAGGTTTTATCTTTAGGAGGCAACTCCTTCTCTGGCTCTGCTCCTCTTAGTATCGCCAATCTGTTACAGCTTGAAACTTTGAATTTGGGGGGAAATGGTTTGACTGGAAGCGTCTTAGTCGAGTTAATCGGACTAAGGAATTTGACTACATTGGATCTCAGTGGAAACAATTTCTCCGGCGACATACCGGCCGGTATAAACAATTTGAATCAGTTGGTTAGTCTCAACCTTAGTAATAGTGGGTTTTCTGGACATATACCGTCGGGCTTGGGAAACCTTCTCAAGCTGACCACTCTTGATTTAAGCAAACAGAGTCTCTCCGGTGAGTTGCCGTTTGAGCTTTTCGGTTTACCAAATTTGCAAGTGATTGAGTTGCAGGAAAACATGTTATCCGGGGAGCTTCCTGAAGGCTTCAGTAGTTTAATGGGTTTACGCCATTTGAACCTTAGTCTCAATCGTTTCACAGGAAGTATTTCATCGAATTTCGGTTTTCTTAGCTCATTAGCTATTCTTTCTCTCTCTGGCAATCAAATTACTGGGGATTTACCGCCGGATATCGGAAACTGCTCTGATCTTCAAGTCCTGGAGCTCCGGTCAAATTTATTGGCAGGACACATTCCTAGTGAACTCTCTCGCCTAACTTATTTGAAAGATTTGGATTTGGGTGTGAACAATTTCAGTGGAGAAATACCAGAAGAAATCTCCCGCTGCTCATCGCTTATTAAATTGCTTCTAAATGGAAATAATCTCTCCGGCATAATACCCAGTTCGTTTTCCAAGCTATCGAACTTAACAGCTCTTGATTTTTCTGCCAACCATTTAAGTGGGGCAGTTCCTGCTGGTCTCAATTTGATTCCTGGGTTGGTGAGTTTCAACGTCTCGAGCAATAATCTCGAAGGTGAGATTCCGGTGGCTCTAGGATCGCGATTCAATAACCCATCCGTGTTTGCTTATAATCTGAAATTGTGCGGGAAGCCATTGAGTAGAAAATGCGATGATAAGGCCAAGAAGGATGGGAAGAAGAAGCTGATTCTTTTGATTGCAGTGGCTGCAACTGGAGTTTGCCTTCTGTTTTTGTGCTGTTGCTTTTACATTTACAGTCTCTTGAAATGGCGGACCAAGCTCAAAGGACTACTATCTGGAGAGAAGCGGAAGAGTCCAGCAAGAGTGAGCTCAGCCGCATCAAGCGGCGGGCGGGGAAGCTCAGATAGTGGAGGGCCGAGACTGGCGATGTTCAACGACATGATTACAGTAGCGGAGACAGTAGAGGCGACGAGGCAATTCGACGAAGAAAATGTTCTGAGTAGGACTAGATATGGGCTGGTTTTTAAAGCCTGTTATAACGATGGAATGGTGCTTTCAATCCGCCGCCTCGCAGATAATTCAGTTGATGAAAACGTGTTCAGAAAAGAAGCCGAATTACTGGGAAAATTAAAGCACCGTAATATCACCGTTCTCCGAGGCTACTACGCCGGCCCACCGCCGGATTTGAGACTCCTCGCTTATGACTACATGCCGAATGGAAACCTTGCGACCCTTTTGCAGGAAGCTTCTCACCAAGATGGTCAAGTGCTTAATTGGCCTATGCGCCACCTCATTGCCATCGGAATCGCTCGTGGTCTGGCTTATCTCCACAGCTCCGCCGTGGTTCACGGCGATGTTAAGCCACAGAACGTTCTATTCGACGCCGATTTCGAAGCCCATTTGTCCGATTTTGGGTTAACTCGTTTTACAGCCGCCGTTTCCACTCCCGTCGGCACGGTGGGATACGTTTCTCCGGAAGCGGCTACAACAGGGGAAGTGACGAAGGAATCTGATATCTACTGCTTTGGTATACTTCTTCTAGAGCTTCTTTCGGGAAAACGGCCGGTGATGTTCTCAGAAGAAGAAGATTTGGTGAAGTGGGTGAAGAAACAGTTGCAAATGGGTCAAATTACAGAATTGTTAGAACCGGGTTTGCTCAAACTTGATCCTGAATCCTTGGAATGGGACGAGTTCTTGGTCGGAATCAAAGTTGGTTTGCTTTGCACCGCCGCCGATCCTCTCGATCGACCCCCAATGTCGGAAGTGGTCTTCATGCTCGAAGGTTGCCGAATTCGACCAGAAGTTTCCTCCTCCGCGGATCCCACATCTCAATCATCGCCGGCGGAAGCGGATAATCGAGTATAA 3051 46.41 MLRKLNLRSNAFNGTIPASLSKCSSLQEVLLQHNSLSGSLPLEIANLTNLQTLSLAQNMLSGVIPGVLPTNLNYLDLSSNSFTGEIPENISSLTHLKLINFSHNQFGGEIPPSLGQLQNLQYLVLDYNILGGTLPSAISNCSSLLHLSVEGNSLRGIISASIGALPNLQVVSLSHNSLSGSVPSSFFCNASRSPPSLQVVQLGFNAFTEIGGTQEATCFSVLQVLDLQRNQITGLFGSWLTQISTLTMLDISGNSFSGEISTDIGKLLMLEELKMADNLFTGEIPDSFSHMNGLKVLSLGGNSFSGSAPLSIANLLQLETLNLGGNGLTGSVLVELIGLRNLTTLDLSGNNFSGDIPAGINNLNQLVSLNLSNSGFSGHIPSGLGNLLKLTTLDLSKQSLSGELPFELFGLPNLQVIELQENMLSGELPEGFSSLMGLRHLNLSLNRFTGSISSNFGFLSSLAILSLSGNQITGDLPPDIGNCSDLQVLELRSNLLAGHIPSELSRLTYLKDLDLGVNNFSGEIPEEISRCSSLIKLLLNGNNLSGIIPSSFSKLSNLTALDFSANHLSGAVPAGLNLIPGLVSFNVSSNNLEGEIPVALGSRFNNPSVFAYNLKLCGKPLSRKCDDKAKKDGKKKLILLIAVAATGVCLLFLCCCFYIYSLLKWRTKLKGLLSGEKRKSPARVSSAASSGGRGSSDSGGPRLAMFNDMITVAETVEATRQFDEENVLSRTRYGLVFKACYNDGMVLSIRRLADNSVDENVFRKEAELLGKLKHRNITVLRGYYAGPPPDLRLLAYDYMPNGNLATLLQEASHQDGQVLNWPMRHLIAIGIARGLAYLHSSAVVHGDVKPQNVLFDADFEAHLSDFGLTRFTAAVSTPVGTVGYVSPEAATTGEVTKESDIYCFGILLLELLSGKRPVMFSEEEDLVKWVKKQLQMGQITELLEPGLLKLDPESLEWDEFLVGIKVGLLCTAADPLDRPPMSEVVFMLEGCRIRPEVSSSADPTSQSSPAEADNRV 1016
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10281854 10284904 - Bma017308.1 Bma03g00969 79642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00969 1016 ProSiteProfiles Protein kinase domain profile. 722 997 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma03g00969 1016 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 220 1006 - -
Bma03g00969 1016 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 2 287 - -
Bma03g00969 1016 SMART serkin_6 722 961 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma03g00969 1016 Gene3D Ribonuclease Inhibitor 1 67 IPR032675 -
Bma03g00969 1016 Gene3D Transferase(Phosphotransferase) domain 1 799 1007 - -
Bma03g00969 1016 Pfam Leucine rich repeat 270 328 IPR001611 GO:0005515
Bma03g00969 1016 Pfam Leucine rich repeat 195 255 IPR001611 GO:0005515
Bma03g00969 1016 Pfam Leucine rich repeat 533 592 IPR001611 GO:0005515
Bma03g00969 1016 Pfam Leucine rich repeat 119 178 IPR001611 GO:0005515
Bma03g00969 1016 SUPERFAMILY Protein kinase-like (PK-like) 703 997 IPR011009 -
Bma03g00969 1016 ProSitePatterns Serine/Threonine protein kinases active-site signature. 843 855 IPR008271 GO:0004672|GO:0006468
Bma03g00969 1016 SMART LRR_typ_2 507 531 IPR003591 -
Bma03g00969 1016 SMART LRR_typ_2 93 117 IPR003591 -
Bma03g00969 1016 SMART LRR_typ_2 532 554 IPR003591 -
Bma03g00969 1016 SMART LRR_typ_2 291 314 IPR003591 -
Bma03g00969 1016 SMART LRR_typ_2 459 483 IPR003591 -
Bma03g00969 1016 SMART LRR_typ_2 219 238 IPR003591 -
Bma03g00969 1016 SMART LRR_typ_2 555 578 IPR003591 -
Bma03g00969 1016 SMART LRR_typ_2 47 70 IPR003591 -
Bma03g00969 1016 SMART LRR_typ_2 411 434 IPR003591 -
Bma03g00969 1016 SMART LRR_typ_2 339 363 IPR003591 -
Bma03g00969 1016 SMART LRR_typ_2 165 188 IPR003591 -
Bma03g00969 1016 Gene3D Phosphorylase Kinase; domain 1 701 798 - -
Bma03g00969 1016 PANTHER LRR RECEPTOR-LIKE KINASE 220 1006 - -
Bma03g00969 1016 Gene3D Ribonuclease Inhibitor 113 216 IPR032675 -
Bma03g00969 1016 PANTHER LRR RECEPTOR-LIKE KINASE 2 287 - -
Bma03g00969 1016 Pfam Leucine Rich Repeat 71 93 IPR001611 GO:0005515
Bma03g00969 1016 SUPERFAMILY L domain-like 2 328 - -
Bma03g00969 1016 Gene3D Ribonuclease Inhibitor 336 634 IPR032675 -
Bma03g00969 1016 Pfam Protein kinase domain 732 944 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma03g00969 1016 Pfam Leucine Rich repeat 340 354 IPR001611 GO:0005515
Bma03g00969 1016 MobiDBLite consensus disorder prediction 998 1016 - -
Bma03g00969 1016 SUPERFAMILY RNI-like 263 621 - -
Bma03g00969 1016 Gene3D Ribonuclease Inhibitor 217 335 IPR032675 -
Bma03g00969 1016 MobiDBLite consensus disorder prediction 997 1016 - -
Bma03g00969 1016 Gene3D Ribonuclease Inhibitor 68 112 IPR032675 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma03g00969 Bma15g00956 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00969 Bma-Chr3:10281854 Bma15g00956 Bma-Chr15:36137684 9.40E-36 dispersed
Bma08g00506 Bma-Chr8:26484942 Bma03g00969 Bma-Chr3:10281854 3.98E-08 transposed
Bma01g00737 Bma-Chr1:6741667 Bma03g00969 Bma-Chr3:10281854 9.29E-18 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66410 PF00069 Pkinase 5.20E-34 CL0016 Bma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00969 - - cmax:111478744 1340.48