Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00971 ATGGAAGTAGGTGATGAACAAACTTCGGGATCGTATAAAACTCGTCTTGAAGATGAGGGGCAGCTGCAGCTGGGAGGCCGTGGGATTGACAATTCGGCGCCGAGCTTGGACCTTATGGATGTCGATCAGTGCCAAACTGTTGGAGATATGGACGATTCCCGCCGCCTCGGAGCTTCGGACTCTGTGCCTGCTGCAAGGCGTGGATTGTGGGGCAGCTGGGGCGGATGGTCCTTCTCCGGAATTGACTTGAAGGTTGACGTGGAGGTGAAGATGAGGGGGGAGGAGCTTAGTTTGGTTAAGCGAAGGCGAGGTCGGCCTCCTCGGGGTCAACCAAAAGCGACGCCTCTACCGAGGAAGAGCGTTGCGAAGGACGAAGAGGATGTCTGCTTTATTTGCTTTGATGGCGGGAGCCTCGTTCTCTGCGATCGCCGGGGCTGCCCCAAGGCCTATCATCCTGCTTGCATCAAGAGGGACGATGCATTCTTTCAATCAAAAGCTAAATGGAATTGTGGATGGCATATATGCAGCAGTTGTCGGAAGGCATCGCACTATATGTGCTATACGTGTACCTTTTCTTTGTGCAAAGGATGCATTAAAGATGCCGATTATCAATGTGTAAGGGGAAGCAAAGGATTGTGTGGAACATGTATGAGAACTATAATGCTATTGGAGAAAAGCTTGCTAGGAAATAATGAAGTAGCGCAAGTCGATTTTGATGACAAAAGTAGTTGGGAATATCTTTTCAAAATATATTGGGTATACTTAAAACAAAAGCTCTCTTTAACTCTTGATGAACTTGCTCGCGCTAAAAATCCATGGAAAGGAGGTGGGACCATGGATCAAAATGGAGGGTTTTTAGGAAACTGTTGTGATGCTAATGATAGCAAGAGTGGTGGTTCAGATAGTGCCATTAGAGGCACAGAGGCTGCCAATTCTAAGACAAAAGCATTTAAGAGGCAACAAAATTTTTCCTGCGAGGTAGGATTCTTAATTGAAAACTCAACAGATGATAAGATGATAACATCAACTGAAGGAAAGGTTTGGGCTACAAATGAGCTTCTGGAGTTTGTTGCGCACATGAGAAATGGTGATATTTCTGAGCTTTCGCAGTTGGATGTGGAGTCTTTAGTGCTAGAATATATTAAGGAAAACAATCTTCGTGATCCTCAACAGAGAAATCAATTTATTTGTGATCCTATGCTGATGAAACTGTTTGGAAAACAACGACTTGGTCATTTTGAAATGCTCAAGCTTCTTGAATATCATTTGCTCTCTAAAGAAAGTTCTTCATCTGCTGACAGAAATAGTAAAGTTCTTGATGTTCCAGTTGTCCAGGTGGAAGTAAAGGGAAGTTTTAGTTGCCAATCAATAACTGATAGTGATAGGAAGCATAGAAAGCGGAAAAAGGCAGATGATAGGAAGCAACAAACGAATCCTGATGAATATGCAGCTATTAATGTTCACAACATTAACCTGATTTACTTACCACGAAATTTAATAGAGACCATTAGCGGTGATACTGAAAATTTTCATGACAAAGTTGTCGGTTCAATAGTGCGAATGCAAATTTCAAGGTGTGATCAAAAGCCTGACTTGTATAGTCTTGTCCAAGTTGTAGGCACGAGCAAGAGTTCTGAACCATATGCGATTGGTGAGAAAACAACTGATGTAATGCTTGATATATTAAATTTAGACAAGAAAGAGGCAATATCGCTTGAAGGGATTTCAAATCAAGAATTTTCTGAGGATGAATGCCGGCGTCTACGCGAGAGTGTAAAATGTGGGCTTCTGAAGAGATTTACTGTGAAGGAGAAAAAGGTAATATATTTTGTGCTGAAAATGAATTCCTTGACTATTTTCCATACGCTTAAAGAGTTGGTGGAGAAATTACAGTTTCTTAGATCCTCCGAAGAACGTCAGCGTCGACTTGCTGAAATTCCTGAAATACATGCTGATCCATCTATGGATCCAAGTTACGAATCTGATGACGATACAAAAGATGTAAAAAAGACTAAACAAGGTGCTTCCTGGCCTACAGACACAATGCTTGAATCATCATGGTTTGGAAGCAAGTCACCTAGTGTACCAAAGAACCATGGAAATCCTACTAGTTTAACGATCAATAATGGGAGTAATCAAGCTGTTGTTTCAGAGGTGTCGCTGCCTCCTCTTTCTAATAGGATAGAACACTTAACGAATGATACTGATATGGAAAAGATGTGGCACTACCAGGACCCTGCAGGAAACGTTCAGGGTCCTTTTTCAATGGCGCAGCTGCAAAAATGGAGTTCAAGTGGACACTTCCCTCTTCATTTAAGAATATGGAAGATGAGTGAAATGCCTACTGATTCTATACTTTTAACTGATGCTTTGACGGCTCAGGAGAGTAAAAAGTCCCTCCTGCGCTATAAGAACCAGGTACTGTCTGCAATTGGGCTATGTTCTGATGATGGTGAAGATCAGTCCAATGACGAGTGGAGTCGAAATCTACATACTAATGAATCAGGTTCTCCTCCAGATTGGAATCGGCCAGCAGATGTAGTCAACTCTAGTGAGTGTCAGCCAAAGAGTTTTGAGCAAAGAACCGCAAATGAAGATAGCACAGGTACTCACCAGTCCCAAGTGCATGAACTCAGTATATCACCATTATCTGCTCAGCCACTTCAATTCTCAAATCAAATAGGGGAAGTTTATAGGGGTGAGAAAAGCACTAGTCCAACTCTTGGGAACCAGAGTTCACGTAAAACCATTGAGGTTGAGGCTAACAGTGGACAGAGCTGTGAGAAACGTTCTGACAGCGAGTGCTGTTCTGGGCAATCTTCTGGTCAAAATTGGAAACCTCTACCGGGGAATGCTACCCAAGATTCTACCGATGGTGTCATTTCTTTTGCTAAGTCAAGTGGACAAGAAAATTGCGACCTTGATTTCCCTGATGTTCCCTGCCCTACTCCAAAGGCAGATGTAGGCTTTACAGGTCAAGCTGCTGAAATCAAGCAGTCTGCTTCGTCGGGTGTTCTTATTCAAGATTCAGTCCCTAGCTGGAGTACTGGTTCAAGTTTAGTGGGTGGAAGGAGACAGCTTCCTGATGTTGCTGGTGGTTGGGGTGTTTATTCTACTGCACCAACCAAAGCTTCTACTGAGGAACGGGACTCCAGTCTTATTACTGCATCTTCTCTGAAACCAGCTGAATTTATCAGTGATTGTGCTGCTACGCCTGCTTCAGTAAATGATCAATTCACACACCCTTCACCCTCTCATCCTACATCAAATGTATCTGATTGGCCAGAAATTATTGAGCCTAATGAATTCAACTCCTTGGGAGACGAATCACTTTCAGATTTGCTTGCAGAAGTTGAAGCTATGGAATCTTTGAGCGAATTGGCTTCGTCAACATCAATTATGAACTGCCGTGACGATTTGACACATGGTTGCAAAATTGATTGTTTCAGCTCTATAGGGCGCTTGAGTCCTAATCCCGAGATGGGGAAAGGCGATGCTTTGAGTTCCACCGGTGATGGACATGTACAATCACAATCCACAATCACAGACGAACCACTTCTGAGATTGCATGTGTTTGATATTGATCCCCAAATGAAATTGGCCGGCCGATCGTCAACGAGTGCTGATGTGGACATAAATAAGAAATACAATGATGTTTCAACCAATCAATGGAAAGGTGGTACAGTTCTCCAAAACTTGACGCACTTCTCCGCAGCTTTAAATATGGACACTGCAGAAAACACTTGGAGAATAGGATCAGAAGCTACTTGGGGAAGTGCAGATATTGGGTGGGGGGGGCTAAACAAAGGAAATCCAAGTGTAGACTGGGAAATTCGATTGGATTCAATTCAAGAAATGGGAAGCATGAATTCTGGCACATCAGCTGGAAACAACACAACCAATTGGTATGGCCAACCAAAATGCAGTCTTGACCTGTTACCGAGCCCGAGAGATCGAAGTAATCAGGGAAGGGACTTAGATAACGGTAGAGGTAGGTCTTTCTGGAATAAGCAACCGGGATTTGGAGGTGGCAATAGAAGTGGAACATCCCGTCCTTCTCCGAGAGGTCAGGGCCAGCGAGTTTGTAAATTTAACGAGAGTGGCTATTGCAAAAGAGGGGCATCATGTAGTTACCTGCACCTTTAA 4146 43.37 MEVGDEQTSGSYKTRLEDEGQLQLGGRGIDNSAPSLDLMDVDQCQTVGDMDDSRRLGASDSVPAARRGLWGSWGGWSFSGIDLKVDVEVKMRGEELSLVKRRRGRPPRGQPKATPLPRKSVAKDEEDVCFICFDGGSLVLCDRRGCPKAYHPACIKRDDAFFQSKAKWNCGWHICSSCRKASHYMCYTCTFSLCKGCIKDADYQCVRGSKGLCGTCMRTIMLLEKSLLGNNEVAQVDFDDKSSWEYLFKIYWVYLKQKLSLTLDELARAKNPWKGGGTMDQNGGFLGNCCDANDSKSGGSDSAIRGTEAANSKTKAFKRQQNFSCEVGFLIENSTDDKMITSTEGKVWATNELLEFVAHMRNGDISELSQLDVESLVLEYIKENNLRDPQQRNQFICDPMLMKLFGKQRLGHFEMLKLLEYHLLSKESSSSADRNSKVLDVPVVQVEVKGSFSCQSITDSDRKHRKRKKADDRKQQTNPDEYAAINVHNINLIYLPRNLIETISGDTENFHDKVVGSIVRMQISRCDQKPDLYSLVQVVGTSKSSEPYAIGEKTTDVMLDILNLDKKEAISLEGISNQEFSEDECRRLRESVKCGLLKRFTVKEKKVIYFVLKMNSLTIFHTLKELVEKLQFLRSSEERQRRLAEIPEIHADPSMDPSYESDDDTKDVKKTKQGASWPTDTMLESSWFGSKSPSVPKNHGNPTSLTINNGSNQAVVSEVSLPPLSNRIEHLTNDTDMEKMWHYQDPAGNVQGPFSMAQLQKWSSSGHFPLHLRIWKMSEMPTDSILLTDALTAQESKKSLLRYKNQVLSAIGLCSDDGEDQSNDEWSRNLHTNESGSPPDWNRPADVVNSSECQPKSFEQRTANEDSTGTHQSQVHELSISPLSAQPLQFSNQIGEVYRGEKSTSPTLGNQSSRKTIEVEANSGQSCEKRSDSECCSGQSSGQNWKPLPGNATQDSTDGVISFAKSSGQENCDLDFPDVPCPTPKADVGFTGQAAEIKQSASSGVLIQDSVPSWSTGSSLVGGRRQLPDVAGGWGVYSTAPTKASTEERDSSLITASSLKPAEFISDCAATPASVNDQFTHPSPSHPTSNVSDWPEIIEPNEFNSLGDESLSDLLAEVEAMESLSELASSTSIMNCRDDLTHGCKIDCFSSIGRLSPNPEMGKGDALSSTGDGHVQSQSTITDEPLLRLHVFDIDPQMKLAGRSSTSADVDINKKYNDVSTNQWKGGTVLQNLTHFSAALNMDTAENTWRIGSEATWGSADIGWGGLNKGNPSVDWEIRLDSIQEMGSMNSGTSAGNNTTNWYGQPKCSLDLLPSPRDRSNQGRDLDNGRGRSFWNKQPGFGGGNRSGTSRPSPRGQGQRVCKFNESGYCKRGASCSYLHL 1381
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10303974 10310276 + Bma017310.1 Bma03g00971 79644

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00971 1381 CDD GYF 738 792 IPR003169 GO:0005515
Bma03g00971 1381 CDD SWIB-MDM2_like 347 423 - -
Bma03g00971 1381 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 1358 1380 IPR000571 GO:0046872
Bma03g00971 1381 Gene3D SWIB/MDM2 domain 336 433 IPR036885 -
Bma03g00971 1381 SMART PHD_3 128 174 IPR001965 -
Bma03g00971 1381 Gene3D - 485 608 IPR036128 GO:0003677
Bma03g00971 1381 MobiDBLite consensus disorder prediction 898 955 - -
Bma03g00971 1381 MobiDBLite consensus disorder prediction 1340 1356 - -
Bma03g00971 1381 ProSiteProfiles Zinc finger C3H1-type profile. 1356 1381 IPR000571 GO:0046872
Bma03g00971 1381 SUPERFAMILY SWIB/MDM2 domain 345 426 IPR036885 -
Bma03g00971 1381 SMART swib_2 359 428 IPR019835 -
Bma03g00971 1381 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 121 216 IPR013083 -
Bma03g00971 1381 SUPERFAMILY FYVE/PHD zinc finger 119 173 IPR011011 -
Bma03g00971 1381 SUPERFAMILY GYF domain 735 792 IPR035445 -
Bma03g00971 1381 MobiDBLite consensus disorder prediction 645 675 - -
Bma03g00971 1381 ProSiteProfiles Plus3 domain profile. 484 622 IPR004343 GO:0003677
Bma03g00971 1381 SMART rtf1 484 594 IPR004343 GO:0003677
Bma03g00971 1381 MobiDBLite consensus disorder prediction 458 478 - -
Bma03g00971 1381 SMART gyf_5 739 794 IPR003169 GO:0005515
Bma03g00971 1381 MobiDBLite consensus disorder prediction 1310 1360 - -
Bma03g00971 1381 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 33 1380 - -
Bma03g00971 1381 MobiDBLite consensus disorder prediction 1 35 - -
Bma03g00971 1381 ProSiteProfiles GYF domain profile. 738 792 IPR003169 GO:0005515
Bma03g00971 1381 MobiDBLite consensus disorder prediction 99 119 - -
Bma03g00971 1381 MobiDBLite consensus disorder prediction 814 886 - -
Bma03g00971 1381 Pfam Plus-3 domain 489 592 IPR004343 GO:0003677
Bma03g00971 1381 ProSitePatterns Zinc finger PHD-type signature. 129 189 IPR019786 -
Bma03g00971 1381 MobiDBLite consensus disorder prediction 458 480 - -
Bma03g00971 1381 MobiDBLite consensus disorder prediction 645 673 - -
Bma03g00971 1381 Pfam GYF domain 741 779 IPR003169 GO:0005515
Bma03g00971 1381 MobiDBLite consensus disorder prediction 847 886 - -
Bma03g00971 1381 Pfam SWIB/MDM2 domain 352 423 IPR003121 -
Bma03g00971 1381 Gene3D - 739 796 IPR035445 -
Bma03g00971 1381 CDD PHD5_NSD 128 173 - -
Bma03g00971 1381 MobiDBLite consensus disorder prediction 688 710 - -
Bma03g00971 1381 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44 33 1380 - -
Bma03g00971 1381 ProSiteProfiles SWIB/MDM2 domain profile. 342 425 IPR003121 -
Bma03g00971 1381 SUPERFAMILY Plus3-like 485 603 IPR036128 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00971 - - - zju:107424392 1170.61
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma03g00971 Bma06g00105 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00971 Bma-Chr3:10303974 Bma13g01153 Bma-Chr13:44725415 3.08E-07 dispersed
Bma03g00573 Bma-Chr3:4786331 Bma03g00971 Bma-Chr3:10303974 4.02E-09 transposed
Bma03g00971 Bma-Chr3:10303974 Bma06g00105 Bma-Chr6:1504564 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1077 Blo04g00896 Blo16g00072 . . Bpe15g00463 Bpe13g00425 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag1664 . . . Chy07g01268 . . . Bda11g01845 . . . Bma03g00971 Bma06g00105 . . . . . . . . . . . . . . . . . . . . . . . . Csa04g00533 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005786 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57048 PF03126 Plus-3 3.10E-19 No_clan Bma TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma03g00971 Bma_Chr03 FPKM 11.697813 13.770494 19.796541 21.448727 9.471494 10.328162 9.261401 31.244879 27.840822 30.586847