Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00972 ATGTCGAAGACGTCTTTGATGACGCCAACAGAGCGGTACGCGGCGGGAGCATTGTTCGCGCTCGCTCTTCACCAGGCTCAGATCCACCAAACTCGTCCTCTTGGATTTTCCGCCGATGATGATCTCTCCGATGAGCGAACCAGTTGTAGCAGCAGCAGCAGCAGTGACTCGGTTTCGGGAGACCCCGAGCTTTGGGTTAACGAAAGTTCTGGCCTTCTCCGTCCAGTTTTCAGGTTCTTTGAAATAAGCTCGGTGGCGTGGTCTGGACTTGAAGAAACGGCAGGGTCGACTTCAGCTAAACATCATGTTGGAGCATTTTTGAGGCTGCTTTCTGAAGAAAATGGTGATAATTCTTCTGAAAGGTTAGATCAGGAGCTTGCTCTTTCAAAAGCAGTGGATGGCATGGTGTTAAGTATGGAAAAGGACCCTGAAGTATTCTTCTCAAAGAAAGAAAAACATCGTGAATATGAAAATGAACGCAGAGAAAAATGCCTCACTGCTGAGCAGCTCTCAAACACTGAATCAGTGGATAGGCATTCAGAAAATCAACCACTGTTGGATGATAGAAATTTTAACATTAACTGTGCTGTTGATGGGCCTATTGTTGAAAACGATGAACAACCTGTCGAAGAGGAAAGAATGCTCAGTTATAAGAGAAAAGTGACAATTTTGTATGAGCTGCTTTCAGCTTGTTTGGCAGATGCTCGTGAAGATGACAAAAAATGTTCCCGGAGAAGAACAGGGTATGATGCACGACATCGTGTTGCTTTACGGTTGCTCTCAACTTGGCTTGATATTAAGTGGATAAAGATGGAAGCCATTGAGACGATAGTTGCTTGCTCTGCAATGGCTTTAGCAAAAAAGGAAGAAGGAAAGCAAGAAGAAACTAGTGAGCAGGAAAACAAATGGGCGAGATGGAAGCGAGGTGGGATAATTGGCGCAGCTGCATTAACTGGAGGAACTTTGATGGCAATCACTGGCGGTTTAGCCGCCCCAGCAATTGCTGCTGGGTTTACTGCCCTAGCTCCAACATTGGGCACCCTCATTCCTGTCATTGGTGCTAGTGGATTTGCAGCAGCTGCAAGTGCTGCAGGAACAGTTGCTGGTTCTGTTGCTGTTGCTGCATCTTTTGGTGCCGCTGGAGCAGGTCTCACAGGTAGCAAAATGGCTCGAAGAACAGGAAGTGTTGATGAATTTGAATTCAGATCCATTGGAGAGAACCATAATCAAGGGAGATTGGCAGTTGGGATTTTGGTCTCAGGTTTTGTGTTTGATGAGGATGACTTTATAAGACCATGGGAAGGTCTGAATGACAACTTGGAAAGGTATGCACTACAATGGGAGTCTCAGAATCTAATTGCAGTTAGCACTGCTATTCAGGATTGGCTTACTTCAAGAATTGCAATGGAGCTGATGAAGCAAGGTGCAATGTTGACTGTATTAAGCACTCTCTTGGCAGCACTTGCATGGCCTGCTACCTTACTAGCAATTACAGATTTTATAGATAGCAAATGGACAATTGCAGTGGACAGATCAGACAAGGCAGGAAAACTGCTTGCCGAGGTTCTGATGAAAGGCTTGCAGGGGAACAGGCCTGTAACACTTGTTGGTTTCTCACTTGGTGCACGTGTGGTTTTCAAGTGTCTTCAGTACTTGGCCAAGAGCGAAAAGAATGCTGGGCTTGTGGAAAGAGTTGTCCTCCTTGGAGCACCAATTTCAATTAAAGATCAGAACTGGGAAGCTGCAAGAAAGATGGTGGCTGGAAGATTTGTGAATGCTTACTCTACGAACTGA 1794 45.6 MSKTSLMTPTERYAAGALFALALHQAQIHQTRPLGFSADDDLSDERTSCSSSSSSDSVSGDPELWVNESSGLLRPVFRFFEISSVAWSGLEETAGSTSAKHHVGAFLRLLSEENGDNSSERLDQELALSKAVDGMVLSMEKDPEVFFSKKEKHREYENERREKCLTAEQLSNTESVDRHSENQPLLDDRNFNINCAVDGPIVENDEQPVEEERMLSYKRKVTILYELLSACLADAREDDKKCSRRRTGYDARHRVALRLLSTWLDIKWIKMEAIETIVACSAMALAKKEEGKQEETSEQENKWARWKRGGIIGAAALTGGTLMAITGGLAAPAIAAGFTALAPTLGTLIPVIGASGFAAAASAAGTVAGSVAVAASFGAAGAGLTGSKMARRTGSVDEFEFRSIGENHNQGRLAVGILVSGFVFDEDDFIRPWEGLNDNLERYALQWESQNLIAVSTAIQDWLTSRIAMELMKQGAMLTVLSTLLAALAWPATLLAITDFIDSKWTIAVDRSDKAGKLLAEVLMKGLQGNRPVTLVGFSLGARVVFKCLQYLAKSEKNAGLVERVVLLGAPISIKDQNWEAARKMVAGRFVNAYSTN 597
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10312849 10319417 + Bma017311.1 Bma03g00972 79645

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00972 597 Gene3D alpha/beta hydrolase 500 597 IPR029058 -
Bma03g00972 597 PANTHER TRANSMEMBRANE/COILED-COIL PROTEIN (DUF726) 3 597 - -
Bma03g00972 597 Pfam Protein of unknown function (DUF726) 305 597 IPR007941 -
Bma03g00972 597 MobiDBLite consensus disorder prediction 37 62 - -
Bma03g00972 597 SUPERFAMILY alpha/beta-Hydrolases 521 580 IPR029058 -
Bma03g00972 597 PANTHER TRANSMEMBRANE AND COILED-COIL DOMAIN-CONTAINING PROTEIN 4 TMCO4 3 597 IPR007941 -
Bma03g00972 597 MobiDBLite consensus disorder prediction 47 62 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00972 - - - mnt:21409370 803.127
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1076 Blo04g00897 . . . Bpe15g00416 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0836 Cone12ag0730 . . . . Chy07g01269 . . . . . . . Bma03g00972 . . . . . . . . . . . . . . . . . . . . . . . . . Csa04g00532 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008264 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 3 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma03g00972 Bma_Chr03 FPKM 23.290159 25.038244 22.806158 21.198423 12.658006 11.699353 13.911792 13.546606 13.519768 13.089314