Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00976 ATGAGAAAGCCGGAGGCTTCAATTTCCACGAAACCTTGTTTCGAAACTCGGTTTCCGGCGAAGGCGAGAAGCAAGCGGGCAAGAGCCGGAGGTAGCTTTTGGGTTCTAGGATCCCCTACGTTAACGGAATCTTCGTCAAGCTCAACCACGTCGTCGTCGTCTTCATCACCGTCAAGCCCCTTGCTTTTCTACAACACGGCGGTTCCTCTCCTCGACGAGACAGTTTTCCCATTCGAAAAGCCGGTTGCTAAGAAACCGAAGAACAGACCCCCGGTCAACGGAAATGGCGGAAGTGGGAGCCAAACAACTCGCAGGTGCAGCCATTGCGGCGTTCCGAAAACGCCACAGTGGAGGGCCGGGCCTCTCGGGGCGAAGACCCTCTGCAACGCCTGTGGGGTTCGATACAAGTCGGGTCGACTCCTACCCGAATACAGACCGGCTTGTAGCCCCACTTTCTCCACCGAATTGCACTCAAACCATCACCGCAAAGTGCTGGAAATGCGCCGAAACAAGGATTCTCCCCCACAACTGGAGAGGAAAACTGAAAACTGA 552 55.07 MRKPEASISTKPCFETRFPAKARSKRARAGGSFWVLGSPTLTESSSSSTTSSSSSSPSSPLLFYNTAVPLLDETVFPFEKPVAKKPKNRPPVNGNGGSGSQTTRRCSHCGVPKTPQWRAGPLGAKTLCNACGVRYKSGRLLPEYRPACSPTFSTELHSNHHRKVLEMRRNKDSPPQLERKTEN 183
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10389800 10390351 - Bma017316.1 Bma03g00976 79649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00976 183 MobiDBLite consensus disorder prediction 93 107 - -
Bma03g00976 183 Pfam GATA zinc finger 106 140 IPR000679 GO:0006355|GO:0043565
Bma03g00976 183 PANTHER GATA TRANSCRIPTION FACTOR 8 173 - -
Bma03g00976 183 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 101 162 - -
Bma03g00976 183 ProSitePatterns GATA-type zinc finger domain. 106 131 IPR000679 GO:0006355|GO:0043565
Bma03g00976 183 SMART GATA_3 100 154 IPR000679 GO:0006355|GO:0043565
Bma03g00976 183 MobiDBLite consensus disorder prediction 37 59 - -
Bma03g00976 183 CDD ZnF_GATA 105 153 IPR000679 GO:0006355|GO:0043565
Bma03g00976 183 MobiDBLite consensus disorder prediction 1 59 - -
Bma03g00976 183 Gene3D - 99 150 IPR013088 GO:0006355|GO:0008270
Bma03g00976 183 MobiDBLite consensus disorder prediction 81 107 - -
Bma03g00976 183 ProSiteProfiles GATA-type zinc finger domain profile. 100 136 IPR000679 GO:0006355|GO:0043565
Bma03g00976 183 PANTHER GATA TRANSCRIPTION FACTOR 8 173 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00976 Bma-Chr3:10389800 Bma05g00426 Bma-Chr5:13638997 6.75E-44 dispersed
Bma03g00976 Bma-Chr3:10389800 Bma08g01154 Bma-Chr8:50558865 1.53E-30 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57049 PF00320 GATA 2.80E-16 CL0167 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00976 - - zju:107410110 214.157