Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00976 ATGAGAAAGCCGGAGGCTTCAATTTCCACGAAACCTTGTTTCGAAACTCGGTTTCCGGCGAAGGCGAGAAGCAAGCGGGCAAGAGCCGGAGGTAGCTTTTGGGTTCTAGGATCCCCTACGTTAACGGAATCTTCGTCAAGCTCAACCACGTCGTCGTCGTCTTCATCACCGTCAAGCCCCTTGCTTTTCTACAACACGGCGGTTCCTCTCCTCGACGAGACAGTTTTCCCATTCGAAAAGCCGGTTGCTAAGAAACCGAAGAACAGACCCCCGGTCAACGGAAATGGCGGAAGTGGGAGCCAAACAACTCGCAGGTGCAGCCATTGCGGCGTTCCGAAAACGCCACAGTGGAGGGCCGGGCCTCTCGGGGCGAAGACCCTCTGCAACGCCTGTGGGGTTCGATACAAGTCGGGTCGACTCCTACCCGAATACAGACCGGCTTGTAGCCCCACTTTCTCCACCGAATTGCACTCAAACCATCACCGCAAAGTGCTGGAAATGCGCCGAAACAAGGATTCTCCCCCACAACTGGAGAGGAAAACTGAAAACTGA 552 55.07 MRKPEASISTKPCFETRFPAKARSKRARAGGSFWVLGSPTLTESSSSSTTSSSSSSPSSPLLFYNTAVPLLDETVFPFEKPVAKKPKNRPPVNGNGGSGSQTTRRCSHCGVPKTPQWRAGPLGAKTLCNACGVRYKSGRLLPEYRPACSPTFSTELHSNHHRKVLEMRRNKDSPPQLERKTEN 183
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10389800 10390351 - Bma017316.1 Bma03g00976 79649

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00976 183 MobiDBLite consensus disorder prediction 93 107 - -
Bma03g00976 183 Pfam GATA zinc finger 106 140 IPR000679 GO:0006355|GO:0043565
Bma03g00976 183 PANTHER GATA TRANSCRIPTION FACTOR 8 173 - -
Bma03g00976 183 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 101 162 - -
Bma03g00976 183 ProSitePatterns GATA-type zinc finger domain. 106 131 IPR000679 GO:0006355|GO:0043565
Bma03g00976 183 SMART GATA_3 100 154 IPR000679 GO:0006355|GO:0043565
Bma03g00976 183 MobiDBLite consensus disorder prediction 37 59 - -
Bma03g00976 183 CDD ZnF_GATA 105 153 IPR000679 GO:0006355|GO:0043565
Bma03g00976 183 MobiDBLite consensus disorder prediction 1 59 - -
Bma03g00976 183 Gene3D - 99 150 IPR013088 GO:0006355|GO:0008270
Bma03g00976 183 MobiDBLite consensus disorder prediction 81 107 - -
Bma03g00976 183 ProSiteProfiles GATA-type zinc finger domain profile. 100 136 IPR000679 GO:0006355|GO:0043565
Bma03g00976 183 PANTHER GATA TRANSCRIPTION FACTOR 8 173 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00976 - - - zju:107410110 214.157
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00976 Bma-Chr3:10389800 Bma05g00426 Bma-Chr5:13638997 6.75E-44 dispersed
Bma03g00976 Bma-Chr3:10389800 Bma08g01154 Bma-Chr8:50558865 1.53E-30 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1071 Blo04g00899 Blo16g00063 Bda04g00030 . . Bpe13g00427 . . . . Cma03g00704 . Car03g00646 . Sed07g1682 . Cpe10g00648 Bhi03g00894 Tan03g2048 Cmetu04g1399 . Hepe04g1570 . . Cla01g01957 Cam01g2046 Cec04g1704 Cco04g1769 Clacu01g2068 Cmu01g1945 Cre04g1619 . . . . Lsi01g00626 . Chy07g01272 Cme08g00904 . . Bda11g01846 . . Bpe06g00027 Bma03g00976 . . Cmo03g00730 . . Cma20g00811 . . . . Bhi10g01940 Tan05g1237 . . Hepe08g0974 . . . . . . . . . . Csa06g03299 Chy02g00597 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma04g00965 . 1 240 C2C2-Gata Transcription Factor Family AT3G60530 52.9 3.3e-53 205.3
Bma03g00976 . 2 172 C2C2-Gata Transcription Factor Family AT5G66320 56.6 2.4e-41 166.4
Bma03g00976 . 8 173 C2C2-Gata Transcription Factor Family AT3G51080 59.3 9.2e-40 161.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008902 3 0 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 2 1 2 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57049 PF00320 GATA 2.80E-16 CL0167 Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma03g00976 Bma_Chr03 FPKM 0.0 0.0 3.034077 2.351909 150.139633 125.436958 142.940262 0.0 0.0 0.0